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Author Varshasnata Mohanty

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Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity.

Voddu Suresh, Varshasnata Mohanty, Kiran Avula, Arup Ghosh, Bharati Singh, Rajendra Kumar Reddy, Deepti Parida, Amol Ratnakar Suryawanshi, Sunil Kumar Raghav, Soma Chattopadhyay, Punit Prasad, Rajeeb Kumar Swain, Rupesh Dash, Ajay Parida, Gulam Hussain Syed, Shantibhusan Senapati,

Syrian golden hamsters (Mesocricetus auratus) infected by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) manifests lung pathology. In this study, efforts were made to check the infectivity of a local SARS-CoV-2 isolate in a self-limiting and non-lethal hamster model and evaluate the differential expression of lung proteins during acute infection ... Read more >>

FASEB J (FASEB journal : official publication of the Federation of American Societies for Experimental Biology)
[2021, 35(7):e21713]

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Molecular alterations in oral cancer between tobacco chewers and smokers using serum proteomics.

Varshasnata Mohanty, Yashwanth Subbannayya, Shankargouda Patil, Riaz Abdulla, Mandakulutur S Ganesh, Arnab Pal, Jay Gopal Ray, David Sidransky, Harsha Gowda, T S Keshava Prasad, Aditi Chatterjee,

<h4>Background</h4>Tobacco exposure (through smoking or chewing) is one of the predominant risk factors associated with the development of oral squamous cell carcinoma (OSCC). Despite the growing number of patients diagnosed with OSCC, there are few circulating biomarkers for identifying individuals at a higher risk of developing the disease. Successful identification ... Read more >>

Cancer Biomark (Cancer biomarkers : section A of Disease markers)
[2021, :]

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Molecular alterations in oral cancer using high-throughput proteomic analysis of formalin-fixed paraffin-embedded tissue.

Varshasnata Mohanty, Yashwanth Subbannayya, Shankargouda Patil, Vinuth N Puttamallesh, Mohd Altaf Najar, Keshava K Datta, Sneha M Pinto, Sameera Begum, Neeta Mohanty, Samapika Routray, Riaz Abdulla, Jay Gopal Ray, David Sidransky, Harsha Gowda, T S Keshava Prasad, Aditi Chatterjee,

Loss of cell differentiation is a hallmark for the progression of oral squamous cell carcinoma (OSCC). Archival Formalin-Fixed Paraffin-Embedded (FFPE) tissues constitute a valuable resource for studying the differentiation of OSCC and can offer valuable insights into the process of tumor progression. In the current study, we performed LC-MS/MS-based quantitative ... Read more >>

J Cell Commun Signal (Journal of cell communication and signaling)
[2021, :]

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The proteomic landscape of resting and activated CD4+ T cells reveal insights into cell differentiation and function

Yashwanth Subbannayya, Markus Haug, Sneha Pinto, Varshasnata Mohanty, Hany Zakaria Meås, Trude Helen Flo, T.S. Keshava Prasad, Richard Kandasamy,

CD4+ T cells (T helper cells) are cytokine-producing adaptive immune cells that activate or regulate the responses of various immune cells. The activation and functional status of CD4+ T cells is important for adequate responses to pathogen infections but has also been associated with auto-immune disorders and survival in several ... Read more >>

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CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasets

Sandeep Kasaragod, Varshasnata Mohanty, Ankur Tyagi, Santosh Kumar Behera, Arun Patil, Sneha Pinto, Keshava Prasad, Prashant Kumar Modi, Harsha Gowda,

Cancer genome sequencing studies have revealed a number of variants in coding regions of several genes. Some of these coding variants play an important role in activating specific pathways that drive proliferation. Coding variants present on cancer cell surfaces by the major histocompatibility complex serve as neo-antigens and result in ... Read more >>

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Assembly and Annotation of the Nuclear and Organellar Genomes of a Dwarf Coconut (Chowghat Green Dwarf) Possessing Enhanced Disease Resistance.

Rajesh Krishna Muliyar, Pallem Chowdappa, Santosh Kumar Behera, Sandeep Kasaragod, Karyath Palliyath Gangaraj, Chinmaya Narayana Kotimoole, Bhagya Nekrakalaya, Varshasnata Mohanty, Rohith Bilgi Sampgod, Gaurab Banerjee, Anupam J Das, Vittal Niral, Anitha Karun, Ajay Kumar Mahato, Kishor Gaikwad, Nagendra Kumar Singh, Thottethodi Subrahmanya Keshava Prasad,

Coconut (<i>Cocos nucifera</i> L.), an important source of vegetable oil, nutraceuticals, functional foods, and housing materials, provides raw materials for a repertoire of industries engaged in the manufacture of cosmetics, soaps, detergents, paints, varnishes, and emulsifiers, among other products. The palm plays a vital role in maintaining and promoting the ... Read more >>

OMICS (Omics : a journal of integrative biology)
[2020, 24(12):726-742]

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A network map of endothelin mediated signaling pathway.

Shobha Dagamajalu, D A B Rex, Lathika Gopalakrishnan, Gayathree Karthikkeyan, Sumrati Gurtoo, Prashant Kumar Modi, Varshasnata Mohanty, M Mujeeburahiman, Sowmya Soman, Rajesh Raju, Vinod Tiwari, T S Keshava Prasad,

J Cell Commun Signal (Journal of cell communication and signaling)
[2021, 15(2):277-282]

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Digging Deeper for the Eye Proteome in Vitreous Substructures: A High-Resolution Proteome Map of the Normal Human Vitreous Base.

Varshasnata Mohanty, Sneha M Pinto, Yashwanth Subbannayya, Mohd Altaf Najar, Kalpana Babu Murthy, Thottethodi Subrahmanya Keshava Prasad, Krishna R Murthy,

Mapping the normal eye proteome in healthy persons is essential to unravel the molecular basis of diseases impacting visual health. The vitreous occupies a large portion of the human eye between the lens and the retina and plays a significant role in vitreoretinal diseases as well as maintaining clarity in ... Read more >>

OMICS (Omics : a journal of integrative biology)
[2020, 24(6):379-389]

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CusVarDB: A tool for building customized sample-specific variant protein database from next-generation sequencing datasets.

Sandeep Kasaragod, Varshasnata Mohanty, Ankur Tyagi, Santosh Kumar Behera, Arun H Patil, Sneha M Pinto, T S Keshava Prasad, Prashant Kumar Modi, Harsha Gowda,

Cancer genome sequencing studies have revealed a number of variants in coding regions of several genes. Some of these coding variants play an important role in activating specific pathways that drive proliferation. Coding variants present on cancer cell surfaces by the major histocompatibility complex serve as neo-antigens and result in ... Read more >>

F1000Res (F1000Research)
[2020, 9:344]

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What Makes Cornea Immunologically Unique and Privileged? Mechanistic Clues from a High-Resolution Proteomic Landscape of the Human Cornea.

Yashwanth Subbannayya, Sneha M Pinto, Varshasnata Mohanty, Shobha Dagamajalu, Thottethodi Subrahmanya Keshava Prasad, Krishna R Murthy,

Success rates of corneal transplantation are particularly high owing to its unique, innate immune privilege derived from a phenomenon known as Anterior Chamber-Associated Immune Deviation (ACAID). Of note, cornea is a transparent, avascular structure that acts as a barrier along with sclera to protect the eye and contributes to optical ... Read more >>

OMICS (Omics : a journal of integrative biology)
[2020, 24(3):129-139]

Cited: 2 times

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Global Proteome Profiling Reveals Drug-Resistant Traits in Elizabethkingia meningoseptica: An Opportunistic Nosocomial Pathogen.

Archana Agrawal, Raju Ravikumar, Chakrakodi N Varun, Manish Kumar, Oishi Chatterjee, Jayshree Advani, Lathika Gopalakrishnan, Sowmya Nagaraj, Varshasnata Mohanty, Arun H Patil, Bhuvaragavan Sreeramulu, Aubid Malik, Sneha M Pinto, Thottethodi Subrahmanya Keshava Prasad,

Elizabethkingia meningoseptica is Gram-negative, rod-shaped opportunistic bacterial pathogen increasingly reported in hospital-acquired outbreaks. This bacterium is well known to thrive in the hospital environment. One of the leading causes of meningitis in pediatric and immune-compromised patients, E. meningoseptica has been noted as a "pathogen of interest" in the context of ... Read more >>

OMICS (Omics : a journal of integrative biology)
[2019, 23(6):318-326]

Cited: 2 times

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Proteomics and Visual Health Research: Proteome of the Human Sclera Using High-Resolution Mass Spectrometry.

Varshasnata Mohanty, Yashwanth Subbannayya, Mohammed Altaf Najar, Sneha M Pinto, Sandeep Kasaragod, Hilda Karuppiah, Bhuvaragavan Sreeramulu, Kunal Kumar Singh, Sunita Dalal, Shyamjith Manikkoth, Cynthia Arunachalam, Thottethodi Subrahmanya Keshava Prasad, Krishna R Murthy,

Eye disorders and resulting visual loss are major public health problems affecting millions of people worldwide. In this context, the sclera is an opaque, thick outer coat covering more than 80% of the eye, and essential in maintaining the shape of the eye and protecting the intraocular contents against infection ... Read more >>

OMICS (Omics : a journal of integrative biology)
[2019, 23(2):98-110]

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Human Optic Nerve: An Enhanced Proteomic Expression Profile.

Gayathree Karthikkeyan, Yashwanth Subbannayya, Mohd Altaf Najar, Varshasnata Mohanty, Sneha M Pinto, Cynthia Arunachalam, Thottethodi Subrahmanya Keshava Prasad, Krishna R Murthy,

Ophthalmology and visual health are new frontiers for postgenomic research and technologies such as proteomics. In this context, the optic nerve and retina extend as the outgrowth of the brain, wherein the latter receives the optical input and the former relays the information for processing. While efforts to understand the ... Read more >>

OMICS (Omics : a journal of integrative biology)
[2018, 22(10):642-652]

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Clinicopathological analysis of oral squamous cell carcinoma among the younger age group in coastal Karnataka, India: A retrospective study.

Riaz Abdulla, Soniya Adyanthaya, Prajna Kini, Varshasnata Mohanty, Neevan D'Souza, Yashwanth Subbannayya,

<h4>Aims</h4>Oral squamous cell carcinoma (OSCC) primarily occurs in older age group. However, in the recent years, incidence of oral cancer in young people has been on rise worldwide. Towards this end, we sought to analyze the clinical and histopathological characteristics of OSCC in patients less than 45 years of age.<h4>Materials ... Read more >>

J Oral Maxillofac Pathol (Journal of oral and maxillofacial pathology : JOMFP)
[2018, 22(2):180-187]

Cited: 8 times

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