Full Text Journal Articles by
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Klebsiella pneumoniae with capsule type K64 is overrepresented among invasive disease in Vietnam

Bich Vu Thi Ngoc, Sylvain Brisse, Trinh Dao Tuyet, Dung Vu Tien Viet, Kathryn Holt, Trung Nguyen Vu, Huong Tran Thi Kieu, Diep Nguyen Thi Ngoc, Rogier van Doorn, Heiman Wertheim,

<ns3:p> <h4>Introduction: </h4> Recent reports indicate the emergence of community-acquired pneumonia associated with K64-<ns3:italic>Klebsiella pneumoniae</ns3:italic>. Here, we identify the capsular types and sequence type of invasive and commensal <ns3:italic>K. pneumoniae</ns3:italic> isolates from Vietnam.</ns3:p><ns3:p> <h4>Methods: </h4></ns3:bold>: We included 93 <ns3:italic>K. pneumoniae</ns3:italic> isolates from patients hospitalized at the National Hospital for Tropical ... Read more >>

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Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry.

Sébastien Bridel, Stephen C Watts, Louise M Judd, Taylor Harshegyi, Virginie Passet, Carla Rodrigues, Kathryn E Holt, Sylvain Brisse,

Klebsiella pathogens affect human and animal health and are widely distributed in the environment. Among these, the Klebsiella pneumoniae species complex, which includes seven phylogroups, is an important cause of community and hospital infections. The Klebsiella oxytoca species complex also causes hospital infections and antibiotic-associated haemorrhagic colitis. The unsuitability of ... Read more >>

Res Microbiol (Research in microbiology)
[2021, :103835]

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Circulation of pertussis and poor protection against diphtheria among middle-aged adults in 18 European countries.

Guy Berbers, Pieter van Gageldonk, Jan van de Kassteele, Ursula Wiedermann, Isabelle Desombere, Tine Dalby, Julie Toubiana, Sotirios Tsiodras, Ildikó Paluska Ferencz, Kathryn Mullan, Algirdas Griskevicius, Tatjana Kolupajeva, Didrik Frimann Vestrheim, Paula Palminha, Odette Popovici, Lena Wehlin, Tamara Kastrin, Lucia Maďarová, Helen Campbell, Csaba Ködmön, Sabrina Bacci, Alex-Mikael Barkoff, Qiushui He, ,

Reported incidence of pertussis in the European Union (EU) and the European Economic Area (EEA) varies and may not reflect the real situation, while vaccine-induced protection against diphtheria and tetanus seems sufficient. We aimed to determine the seroprevalence of DTP antibodies in EU/EEA countries within the age groups of 40-49 ... Read more >>

Nat Commun (Nature communications)
[2021, 12(1):2871]

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Characterization of Klebsiella pneumoniae isolated from patients suspected of pulmonary or bubonic plague during the Madagascar epidemic in 2017

Andriniaina Rakotondra, Lova Andrianonimiadana, Soloandry Rahajandraibe, Solohery Razafimahatratra, Voahangy Andrianaivoarimanana, Soanandrasana Rahelinirina, Tania Crucitti, Sylvain Brisse, Victor Jeannoda, Minoarisoa Rajerison, Jean-Marc Collard,

Klebsiella pneumoniae can lead to a wide range of diseases including pneumonia, bloodstream, and urinary tract infections. During a short period of a plague epidemic in October 2017 in Madagascar, 12 K. pneumoniae isolates were identified in ten sputum and two buboes aspirate samples. These isolates were from 12 patients ... Read more >>

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Leakiness at the human-animal interface in Southeast Asia and implications for the spread of antibiotic resistance

Maya Nadimpalli, Marc Stegger, Roberto Viau, Vuthy Yith, Agathe de Lauzanne, Nita Sem, Laurence Borand, Bich-tram Huynh, Sylvain Brisse, Virginie Passet, Søren Overballe-Petersen, Maliha Aziz, Malika Gouali, Jan Jacobs, Thong Phe, Bruce Hungate, Victor Leshyk, Amy Pickering, François Gravey, Cindy Liu, Timothy Johnson, Simon Le Hello, Lance Price,

International efforts to curb antimicrobial resistance have focused on drug development and limiting unnecessary use. However, in areas where water, sanitation, and hygiene infrastructure is lacking, and where biosecurity in food-animal production is poor, pathogen-flow between humans and animals could exacerbate the emergence and spread of resistant pathogens. Here, we ... Read more >>

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Gastrointestinal carriage of Klebsiella pneumoniae in a general adult population in Norway: a cross-sectional study of risk factors and bacterial genomic diversity

Niclas Raffelsberger, Marit Andrea Klokkhammer Hetland, Kristian Svendsen, Lars Småbrekke, Iren Löhr, Lotte Leonore Eivindsdatter Andreassen, Sylvain Brisse, Kathryn Holt, Arnfinn Sundsfjord, Ørjan Samuelsen, Kirsten Gravningen,

<h4>Summary</h4> <h4>Background</h4> Klebsiella pneumoniae is a leading public health threat due to its increasing prevalence of antibiotic resistance. Gastrointestinal carriage of K. pneumoniae is a risk factor for subsequent infections in hospitalised patients. We determined risk factors for gastrointestinal carriage and the genomic population structure of K. pneumoniae colonising humans ... Read more >>

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A Point Prevalence Survey of Antibiotic Resistance in the Irish Environment, 2018-2019.

Brigid Hooban, Kelly Fitzhenry, Niamh Cahill, Aoife Joyce, Louise O' Connor, James E Bray, Sylvain Brisse, Virginie Passet, Raza Abbas Syed, Martin Cormican, Dearbháile Morris,

Water bodies worldwide have proven to be vast reservoirs of clinically significant antibiotic resistant organisms. Contamination of waters by anthropogenic discharges is a significant contributor to the widespread dissemination of antibiotic resistance. The aim of this research was to investigate multiple different anthropogenic sources on a national scale for the ... Read more >>

Environ Int (Environment international)
[2021, 152:106466]

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High-Resolution Typing of Staphylococcus epidermidis Based on Core Genome Multilocus Sequence Typing To Investigate the Hospital Spread of Multidrug-Resistant Clones.

Anne Jamet, Julien Guglielmini, Bryan Brancotte, Mathieu Coureuil, Daniel Euphrasie, Julie Meyer, Johanna Roux, Jean-Philippe Barnier, Emmanuelle Bille, Agnès Ferroni, Jean-François Magny, Christine Bôle-Feysot, Alain Charbit, Xavier Nassif, Sylvain Brisse,

<i>Staphylococcus epidermidis</i> is a pathogen emerging worldwide as a leading cause of health care-associated infections. A standardized high-resolution typing method to document transmission and dissemination of multidrug-resistant <i>S. epidermidis</i> strains is needed. Our aim was to provide a core genome multilocus sequence typing (cgMLST) scheme for <i>S. epidermidis</i> to improve ... Read more >>

J Clin Microbiol (Journal of clinical microbiology)
[2021, 59(3):]

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Genome of Superficieibacter maynardsmithii, a novel, antibiotic susceptible representative of Enterobacteriaceae.

Gherard Batisti Biffignandi, Marjorie J Gibbon, Marta Corbella, Harry A Thorpe, Cristina Merla, Michele Castelli, Teemu Kallonen, Katie Pegrum, Sylvain Brisse, Jukka Corander, Piero Marone, Edward J Feil, Davide Sassera,

During a citywide microbiological screening project in Pavia (Italy) a bacterial strain isolated from the surface of an Automated Teller Machine was classified as a Klebsiella sp. by MALDI-TOF spectrometry, and shown to be susceptible to the most antimicrobial classes by phenotypic testing. After Illumina genome sequencing and subsequent assembly, ... Read more >>

G3 (Bethesda) (G3 (Bethesda, Md.))
[2021, 11(2):]

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Population genomics and antimicrobial resistance in Corynebacterium diphtheriae.

Melanie Hennart, Leonardo G Panunzi, Carla Rodrigues, Quentin Gaday, Sarah L Baines, Marina Barros-Pinkelnig, Annick Carmi-Leroy, Melody Dazas, Anne Marie Wehenkel, Xavier Didelot, Julie Toubiana, Edgar Badell, Sylvain Brisse,

<h4>Background</h4>Corynebacterium diphtheriae, the agent of diphtheria, is a genetically diverse bacterial species. Although antimicrobial resistance has emerged against several drugs including first-line penicillin, the genomic determinants and population dynamics of resistance are largely unknown for this neglected human pathogen.<h4>Methods</h4>Here, we analyzed the associations of antimicrobial susceptibility phenotypes, diphtheria toxin production, ... Read more >>

Genome Med (Genome medicine)
[2020, 12(1):107]

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Incidence and severity of pertussis hospitalisations in infants aged less than 1 year in 37 hospitals of six EU/EEA countries, results of PERTINENT sentinel pilot surveillance system, December 2015 to December 2018.

Lore Merdrignac, Fatima Aït El Belghiti, Elisabetta Pandolfi, Mireia Jané, Jane Murphy, Kateřina Fabiánová, Manuel García Cenoz, Elmira Flem, Sophie Guillot, Alberto E Tozzi, Gloria Carmona, Adele Habington, Jana Zavadilová, Ana Navasués, Håkon Bøås, Daniel Lévy-Brühl, Beatrice Ferretti, Miguel Lanaspa, Niam O'Sullivan, Pavla Křížová, Leticia Fernandino, Terese Bekkevold, Thomas Hanslik, Carmen Muñoz-Almagro, Sabrina Bacci, Gianfranco Spiteri, Marta Valenciano, Alain Moren, , ,

IntroductionPERTINENT is a pilot active surveillance system of infants hospitalised with pertussis in six European Union/European Economic Area countries (37 hospitals, seven sites).AimThis observational study aimed to estimate annual pertussis incidence per site from 2016 to 2018 and respective trends between 2017 and 2018. Pertussis cases were described, including their ... Read more >>

Euro Surveill (Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin)
[2021, 26(4):]

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Corynebacterium diphtheriae Infection in Mahajanga, Madagascar: First Case Report.

Rivo Solotiana Rakotomalala, Zo Zafitsara Andrianirina, Elisoa Ratsima, Patrick Randrianandraina, Frédérique Randrianirina, Glenn Torrencelli Edosoa, Tahirimalala Rabenandrianina, Edgar Badell, Julie Toubiana, Diavolana Andrianarimanana, Sylvain Brisse, Andry Rasamindrakotroka,

Diphtheria is an infection that has been unreported for more than two decades in Mahajanga. A child, aged 4, presented with a pseudomembranous pharyngitis was associated with a dysphagia. He was from a rural municipality of Ambato Boeny at Mahajanga province and was admitted to the Pediatric Unit of the ... Read more >>

J Trop Pediatr (Journal of tropical pediatrics)
[2021, 67(1):]

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Emergence and global spread ofListeria monocytogenesmain clinical clonal complex

Alexandra Moura, Noémie Lefrancq, Alexandre Leclercq, Thierry Wirth, Vítor Borges, Brent Gilpin, Timothy Dallman, Joachim Frey, Eelco Franz, Eva Nielsen, Juno Thomas, Arthur Pightling, Benjamin Howden, Cheryl Tarr, Peter Gerner-Smidt, Simon Cauchemez, Henrik Salje, Sylvain Brisse, Marc Lecuit, ,

Retracing microbial emergence and spread is essential to understanding the evolution and dynamics of pathogens. The bacterial foodborne pathogen Listeria monocytogenes clonal complex 1 ( Lm -CC1) is the most prevalent clonal group associated with listeriosis, and is strongly associated with cattle and dairy products. Here we analysed 2,021 Lm ... Read more >>

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Correction: Multilocus Sequence Typing as a Replacement for Serotyping in Salmonella enterica.

Mark Achtman, John Wain, François-Xavier Weill, Satheesh Nair, Zhemin Zhou, Vartul Sangal, Mary G Krauland, James L Hale, Heather Harbottle, Alexandra Uesbeck, Gordon Dougan, Lee H Harrison, Sylvain Brisse, ,

[This corrects the article DOI: 10.1371/journal.ppat.1002776.]. ... Read more >>

PLoS Pathog (PLoS pathogens)
[2020, 16(10):e1009040]

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Elizabethkingia anophelis meningitis in a traveler returning from the Americas.

Nicolas Auffret, Radu Anghel, Sylvain Brisse, Brice Rey, Déborah Schenesse, Olivier Moquet,

Med Mal Infect (Medecine et maladies infectieuses)
[2020, :]

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Klebsiella MALDI TypeR: a web-based tool for Klebsiella identification based on MALDI-TOF mass spectrometry

Sébastien Bridel, Stephen Watts, Louise Judd, Taylor Harshegyi, Virginie Passet, Carla Rodrigues, Kathryn Holt, Sylvain Brisse,

<h4>Motivation</h4> Klebsiella species are increasingly multidrug resistant pathogens affecting human and animal health and are widely distributed in the environment. Among these, the Klebsiella pneumoniae species complex (KpSC), which includes seven phylogroups, is an important cause of community and hospital infections. In addition, the Klebsiella oxytoca species complex (KoSC) also ... Read more >>

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Correction: Genus-wide Leptospira core genome multilocus sequence typing for strain taxonomy and global surveillance.

Julien Guglielmini, Pascale Bourhy, Olivier Schiettekatte, Farida Zinini, Sylvain Brisse, Mathieu Picardeau,

[This corrects the article DOI: 10.1371/journal.pntd.0007374.]. ... Read more >>

PLoS Negl Trop Dis (PLoS neglected tropical diseases)
[2020, 14(8):e0008673]

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Characterization of Klebsiella pneumoniae isolates from a mother-child cohort in Madagascar.

Andriniaina Rakotondrasoa, Virginie Passet, Perlinot Herindrainy, Benoit Garin, Elsa Kermorvant-Duchemin, Elisabeth Delarocque-Astagneau, Didier Guillemot, Bich-Tram Huynh, Sylvain Brisse, Jean-Marc Collard,

OBJECTIVES:To define characteristics of Klebsiella pneumoniae isolated from carriage and infections in mothers and their neonates belonging to a paediatric cohort in Madagascar. METHODS:A total of 2000 mothers and their 2001 neonates were included. For each mother, vaginal and stool samples were collected at the birth. Additionally, upon suspicion of ... Read more >>

J Antimicrob Chemother (The Journal of antimicrobial chemotherapy)
[2020, 75(7):1736-1746]

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Community-acquired infection caused by the uncommon hypervirulent Klebsiella pneumoniae ST66-K2 lineage.

Carla Rodrigues, Camille d'Humières, Grégory Papin, Virginie Passet, Etienne Ruppé, Sylvain Brisse,

<i>Klebsiella pneumoniae</i> (Kp) reference strain Kp52.145 is widely used in experimental <i>Klebsiella</i> pathophysiology. Since 1935, only one other strain of the same sublineage (sequence type ST66, capsular serotype K2) was isolated (AJ210, Australia). Here, we describe a community-acquired invasive infection caused by a ST66-K2 Kp strain in France. Four hypermucoviscous ... Read more >>

Microb Genom (Microbial genomics)
[2020, 6(8):]

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Epidemiological, clinical and genomic insights into the ongoing diphtheria outbreak in Yemen

Edgar Badell, Abdulilah Alharazi, Alexis Criscuolo, Noemie Lefrancq, Valerie Bouchez, Julien Guglielmini, Melanie Hennart, Annick Carmi-Leroy, Nora Zidane, Marine Pascal-Perrigault, Manon Lebreton, Helena Martini, Henrik Salje, Julie Toubiana, Fekri Dureab, Ghulam Dhabaan, Sylvain Brisse, ,

<h4>Background</h4> An outbreak of diphtheria, declared in Yemen in October 2017, is still ongoing. Methods. Probable cases were recorded through an electronic diseases early warning system. Microbiological culture, genomic sequencing, antimicrobial susceptibility and toxin production testing were performed. <h4>Methods</h4> Probable cases were recorded through an electronic diseases early warning system. ... Read more >>

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Low Detection Rate of Bordetella pertussis Using the BioFire FilmArray Respiratory Panel 2plus.

Sophie Guillot, Assaf Mizrahi, Nathalie Armatys, Laureen Chat, Alban Le Monnier, Sylvain Brisse, Julie Toubiana,

Syndromic respiratory panels are increasingly used worldwide. Their performance for detection of Bordetella pertussis needs to be evaluated. We found that the FilmArray Respiratory Panel 2plus (RP2+) assay, which uses the pertussis toxin promoter target for B. pertussis, can only detect highly charged samples. Negative RP2+ results should not be interpreted ... Read more >>

Open Forum Infect Dis (Open forum infectious diseases)
[2020, 7(8):ofaa267]

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The global meningitis genome partnership.

Elizabeth Rodgers, Stephen D Bentley, Ray Borrow, Holly B Bratcher, Sylvain Brisse, Angela B Brueggemann, Dominique A Caugant, Jamie Findlow, LeAnne Fox, Linda Glennie, Lee H Harrison, Odile B Harrison, Robert S Heyderman, Melissa Jansen van Rensburg, Keith A Jolley, Brenda Kwambana-Adams, Shamez Ladhani, Marc LaForce, Michael Levin, Jay Lucidarme, Neil MacAlasdair, Jenny Maclennan, Martin C J Maiden, Laura Maynard-Smith, Alessandro Muzzi, Philipp Oster, Charlene M C Rodrigues, Olivier Ronveaux, Laura Serino, Vinny Smith, Arie van der Ende, Julio Vázquez, Xin Wang, Saber Yezli, James M Stuart,

Genomic surveillance of bacterial meningitis pathogens is essential for effective disease control globally, enabling identification of emerging and expanding strains and consequent public health interventions. While there has been a rise in the use of whole genome sequencing, this has been driven predominately by a subset of countries with adequate ... Read more >>

J Infect (The Journal of infection)
[2020, 81(4):510-520]

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Population genomics and antimicrobial resistance inCorynebacterium diphtheriae

Melanie Hennart, Leonardo Panunzi, Carla Rodrigues, Quentin Gaday, Sarah Baines, Marina Barros-Pinkelnig, Annick Carmi-Leroy, Melody Dazas, Anne-Marie Wehenkel, Xavier Didelot, Julie Toubiana, Edgar Badell, Sylvain Brisse,

<h4>ABSTRACT</h4> Corynebacterium diphtheriae , the agent of diphtheria, is a genetically diverse bacterial species. Although antimicrobial resistance has emerged against several drugs including first-line penicillin, the genomic determinants and population dynamics of resistance are largely unknown for this neglected human pathogen. Here we analyzed the associations of antimicrobial susceptibility phenotypes, ... Read more >>

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Klebsiella pneumoniae carriage in low-income countries: antimicrobial resistance, genomic diversity and risk factors.

Bich-Tram Huynh, Virginie Passet, Andriniaina Rakotondrasoa, Thierno Diallo, Alexandra Kerleguer, Melanie Hennart, Agathe De Lauzanne, Perlinot Herindrainy, Abdoulaye Seck, Raymond Bercion, Laurence Borand, Maria Pardos de la Gandara, Elisabeth Delarocque-Astagneau, Didier Guillemot, Muriel Vray, Benoit Garin, Jean-Marc Collard, Carla Rodrigues, Sylvain Brisse,

Background Klebsiella pneumoniae (hereafter, <i>Kp</i>) is a major public health threat responsible for high levels of multidrug resistant (MDR) human infections. Besides, Kp also causes severe infections in the community, especially in Asia and Africa. Although most Kp infections are caused by endogenous intestinal carriage, little is known about the ... Read more >>

Gut Microbes (Gut microbes)
[2020, 11(5):1287-1299]

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The ZKIR Assay, a Real-Time PCR Method for the Detection of Klebsiella pneumoniae and Closely Related Species in Environmental Samples.

Elodie Barbier, Carla Rodrigues, Geraldine Depret, Virginie Passet, Laurent Gal, Pascal Piveteau, Sylvain Brisse,

Klebsiella pneumoniae is of growing public health concern due to the emergence of strains that are multidrug resistant, virulent, or both. Taxonomically, the K. pneumoniae complex ("Kp") includes seven phylogroups, with Kp1 (K. pneumoniae sensu stricto) being medically prominent. Kp can be present in environmental sources such as soils and ... Read more >>

Appl Environ Microbiol (Applied and environmental microbiology)
[2020, 86(7):]

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