Full Text Journal Articles by
Author Mang Shi

Advertisement

Find full text journal articles






Transcriptomic characteristics of bronchoalveolar lavage fluid and peripheral blood mononuclear cells in COVID-19 patients.

Yong Xiong, Yuan Liu, Liu Cao, Dehe Wang, Ming Guo, Ao Jiang, Dong Guo, Wenjia Hu, Jiayi Yang, Zhidong Tang, Honglong Wu, Yongquan Lin, Meiyuan Zhang, Qi Zhang, Mang Shi, Yingle Liu, Yu Zhou, Ke Lan, Yu Chen,

Circulating in China and 158 other countries and areas, the ongoing COVID-19 outbreak has caused devastating mortality and posed a great threat to public health. However, efforts to identify effectively supportive therapeutic drugs and treatments has been hampered by our limited understanding of host immune response for this fatal disease. ... Read more >>

Emerg Microbes Infect (Emerging microbes & infections)
[2020, 9(1):761-770]

Cited: 0 times

View full text PDF listing >>



Meta-transcriptomic analysis of virus diversity in urban wild birds with paretic disease.

Wei-Shan Chang, John-Sebastian Eden, Jane Hall, Mang Shi, Karrie Rose, Edward C Holmes,

Wild birds are major natural reservoirs and potential dispersers of a variety of infectious diseases. As such, it is important to determine the diversity of viruses they carry and use this information to help understand the potential risks of spill-over to humans, domestic animals, and other wildlife. We investigated the ... Read more >>

J. Virol. (Journal of virology)
[2020, :]

Cited: 0 times

View full text PDF listing >>



Advertisement

Risk Factors for the Critical Illness in SARS-CoV-2 Infection: a Multicenter Retrospective Cohort Study

Sijing Cheng, Dingfeng Wu, Jie Li, Yifeng Zou, Yunle Wan, Lihan Shen, Lixin Zhu, Mang Shi, Linlin Hou, Tao Xu, Na Jiao, Yichen Li, Yibo Huang, Zhipeng Tang, Mingwei Xu, Shusong Jiang, Maokun Li, Guangjun Yan, Ping Lan, Ruixin Zhu,

Abstract Background Prior studies reported that 5~32% COVID-19 patients were critically ill, a situation that poses great challenge for the management of the patients and ICU resources. We aim to identify independent risk factors to serve as prediction markers for critical illness of SARS-CoV-2 infection. Methods Fifty-two critical and 200 ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Metagenomic identification of diverse animal hepaciviruses and pegiviruses

Ashleigh Porter, John H.-O. Pettersson, Wei-Shan Chang, Erin Harvey, Karrie Rose, Mang Shi, John-Sebastian Eden, Jan Buchmann, Craig Moritz, Edward Holmes,

Abstract The RNA virus family Flaviviridae harbours several important pathogens of humans and other animals, including Zika virus, dengue virus and hepatitis C virus. The Flaviviridae are currently divided into four genera - Hepacivirus , Pegivirus , Pestivirus and Flavivirus – each of which have a diverse host range. Members ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Insights into the evolutionary history and epidemiological characteristics of the emerging lineage 1 porcine reproductive and respiratory syndrome viruses in China.

Yan-Kuo Sun, Yong-Jie Chen, Yu Cai, Qi Li, Jie-Xiong Xie, Guan Liang, Qi Gao, Zhi-Qing Yu, Gang Lu, Liang-Zong Huang, Chun-Quan Ma, Lang Gong, Heng Wang, Mang Shi, Gui-Hong Zhang,

The newly emerged lineage 1 porcine reproductive and respiratory syndrome viruses (PRRSVs) (especially the NADC30-like and NADC34-like viruses) have posed a direct threat to the Chinese pig industry since 2013. The phylogenetic, epidemic, and recombinant properties of these viruses have not yet systematically analysed in China. This report presents regular ... Read more >>

Transbound Emerg Dis (Transboundary and emerging diseases)
[2020, :]

Cited: 0 times

View full text PDF listing >>



Comparative Analysis of RNA Virome Composition in Rabbits and Associated Ectoparasites.

Jackie E Mahar, Mang Shi, Robyn N Hall, Tanja Strive, Edward C Holmes,

Ectoparasites play an important role in virus transmission among vertebrates. Little, however, is known about the nature of those viruses that pass between invertebrates and vertebrates. In Australia, flies and fleas support the mechanical transmission of two viral biological controls against wild rabbits-rabbit hemorrhagic disease virus (RHDV) and myxoma virus. ... Read more >>

J. Virol. (Journal of virology)
[2020, 94(11):]

Cited: 0 times

View full text PDF listing >>



Molecular Epidemiology and Vaccine Compatibility Analysis of Seasonal Influenza Viruses in Wuhan, 2016-2019.

Liang-Jun Chen, Jing-Jing Guo, Wei-Wei Guo, E-Xiang Shen, Xin Wang, Kai-Ji Li, Jie Yan, Mang Shi, Yi-Rong Li, Wei Hou,

Influenza viruses (FLUV) cause high morbidity and mortality annually in the world and pose a serious threat to the public health. Wuhan, as an important transportation hub in China, has a dense population and suitable climate, which also lays a major hidden danger for the outbreak of influenza. To survey ... Read more >>

Virol Sin (Virologica Sinica)
[2020, :]

Cited: 0 times

View full text PDF listing >>



Enteric involvement in hospitalised patients with COVID-19 outside Wuhan.

Yunle Wan, Jie Li, Lihan Shen, Yifeng Zou, Linlin Hou, Lixin Zhu, Howard S Faden, Zhipeng Tang, Mang Shi, Na Jiao, Yichen Li, Sijing Cheng, Yibo Huang, Dingfeng Wu, Zhifeng Xu, Linnuo Pan, Jun Zhu, Guangjun Yan, Ruixin Zhu, Ping Lan,

Lancet Gastroenterol Hepatol (The lancet. Gastroenterology & hepatology)
[2020, 5(6):534-535]

Cited: 0 times

View full text PDF listing >>



Clinical and epidemiological features of COVID-19 family clusters in Beijing, China.

Rui Song, Bing Han, Meihua Song, Lin Wang, Christopher P Conlon, Tao Dong, Di Tian, Wei Zhang, Zhihai Chen, Fujie Zhang, Mang Shi, Xingwang Li,

BACKGROUND:Since its discovery, SARS-CoV-2 has been spread throughout China before becoming a global pandemic. In Beijing, family clusters are the main mode of human-human transmission accounting for 57.6% of the total confirmed cases. METHOD:We present the epidemiological and clinical features of the clusters of three large and one small families. ... Read more >>

J. Infect. (The Journal of infection)
[2020, :]

Cited: 0 times

View full text PDF listing >>



Sustained RNA virome diversity in Antarctic penguins and their ticks.

Michelle Wille, Erin Harvey, Mang Shi, Daniel Gonzalez-Acuña, Edward C Holmes, Aeron C Hurt,

Despite its isolation and extreme climate, Antarctica is home to diverse fauna and associated microorganisms. It has been proposed that the most iconic Antarctic animal, the penguin, experiences low pathogen pressure, accounting for their disease susceptibility in foreign environments. There is, however, a limited understanding of virome diversity in Antarctic ... Read more >>

ISME J (The ISME journal)
[2020, 14(7):1768-1782]

Cited: 0 times

View full text PDF listing >>



Meta-transcriptomic analysis of virus diversity in urban wild birds with paretic disease

Wei-Shan Chang, John-Sebastian Eden, Jane Hall, Mang Shi, Karrie Rose, Edward Holmes,

Abstract Wild birds are major natural reservoirs and potential dispersers of a variety of infectious diseases. As such, it is important to determine the diversity of viruses they carry and use this information to help understand the potential risks of spill-over to humans, domestic animals, and other wildlife. We investigated ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



High resolution metagenomic characterization of complex infectomes in paediatric acute respiratory infection.

Ci-Xiu Li, Wei Li, Jun Zhou, Bing Zhang, Yan Feng, Chang-Ping Xu, Yi-Yu Lu, Edward C Holmes, Mang Shi,

The diversity of pathogens associated with acute respiratory infection (ARI) makes diagnosis challenging. Traditional pathogen screening tests have a limited detection range and provide little additional information. We used total RNA sequencing ("meta-transcriptomics") to reveal the full spectrum of microbes associated with paediatric ARI. Throat swabs were collected from 48 ... Read more >>

Sci Rep (Scientific reports)
[2020, 10(1):3963]

Cited: 0 times

View full text PDF listing >>



Phylogenetics, Genomic Recombination, and NSP2 Polymorphic Patterns of Porcine Reproductive and Respiratory Syndrome Virus in China and the United States in 2014-2018.

Fang Yu, Yi Yan, Mang Shi, Hai-Zhou Liu, Hong-Liang Zhang, Yong-Bo Yang, Xin-Yi Huang, Phillip C Gauger, Jianqiang Zhang, Yan-He Zhang, Guang-Zhi Tong, Zhi-Jun Tian, Jian-Jun Chen, Xue-Hui Cai, Di Liu, Ganwu Li, Tong-Qing An,

Porcine reproductive and respiratory syndrome virus (PRRSV), an important pathogen that affects the pig industry, is a highly genetically diverse RNA virus. However, the phylogenetic and genomic recombination properties of this virus have not been completely elucidated. In this study, comparative analyses of all available genomic sequences of North American ... Read more >>

J. Virol. (Journal of virology)
[2020, 94(6):]

Cited: 0 times

View full text PDF listing >>



RNA based mNGS approach identifies a novel human coronavirus from two individual pneumonia cases in 2019 Wuhan outbreak.

Liangjun Chen, Weiyong Liu, Qi Zhang, Ke Xu, Guangming Ye, Weichen Wu, Ziyong Sun, Fang Liu, Kailang Wu, Bo Zhong, Yi Mei, Wenxia Zhang, Yu Chen, Yirong Li, Mang Shi, Ke Lan, Yingle Liu,

From December 2019, an outbreak of unusual pneumonia was reported in Wuhan with many cases linked to Huanan Seafood Market that sells seafood as well as live exotic animals. We investigated two patients who developed acute respiratory syndromes after independent contact history with this market. The two patients shared common ... Read more >>

Emerg Microbes Infect (Emerging microbes & infections)
[2020, 9(1):313-319]

Cited: 0 times

View full text PDF listing >>



Discovery and Prevalence of Divergent RNA Viruses in European Field Voles and Rabbits.

Theocharis Tsoleridis, Joseph G Chappell, Elodie Monchatre-Leroy, Gérald Umhang, Mang Shi, Malcolm Bennett, Rachael E Tarlinton, C Patrick McClure, Edward C Holmes, Jonathan K Ball,

The advent of unbiased metagenomic virus discovery has revolutionized studies of virus biodiversity and evolution. Despite this, our knowledge of the virosphere, including in mammalian species, remains limited. We used unbiased metagenomic sequencing to identify RNA viruses in European field voles and rabbits. Accordingly, we identified a number of novel ... Read more >>

Viruses (Viruses)
[2019, 12(1):]

Cited: 0 times

View full text PDF listing >>



A new lineage of segmented RNA viruses infecting animals.

Darren J Obbard, Mang Shi, Katherine E Roberts, Ben Longdon, Alice B Dennis,

Metagenomic sequencing has revolutionised our knowledge of virus diversity, with new virus sequences being reported faster than ever before. However, virus discovery from metagenomic sequencing usually depends on detectable homology: without a sufficiently close relative, so-called 'dark' virus sequences remain unrecognisable. An alternative approach is to use virus-identification methods that ... Read more >>

Virus Evol (Virus evolution)
[2020, 6(1):vez061]

Cited: 0 times

View full text PDF listing >>



Identification of A Novel Papillomavirus Associated with Squamous Cell Carcinoma in A Domestic Cat.

Maura Carrai, Kate Van Brussel, Mang Shi, Ci-Xiu Li, Wei-Shan Chang, John S Munday, Katja Voss, Alicia McLuckie, David Taylor, Andrew Laws, Edward C Holmes, Vanessa R Barrs, Julia A Beatty,

Papillomaviruses infect the skin and mucosal surfaces of diverse animal hosts with consequences ranging from asymptomatic colonization to highly malignant epithelial cancers. Increasing evidence suggests a role for papillomaviruses in the most common cutaneous malignancy of domestic cats, squamous cell carcinoma (SCC). Using total DNA sequencing we identified a novel ... Read more >>

Viruses (Viruses)
[2020, 12(1):]

Cited: 0 times

View full text PDF listing >>



Sustained virome diversity in Antarctic penguins and their ticks: geographical connectedness and no evidence for low pathogen pressure

Michelle Wille, Erin Harvey, Mang Shi, Daniel Gonzalez-Acuña, Edward Holmes, Aeron Hurt,

Abstract Despite its isolation and extreme climate, Antarctica is home to diverse fauna and associated microorganisms. It has been proposed that the most iconic Antarctic animal, the penguin, experiences low pathogen pressure, accounting for their disease susceptibility in foreign environments. However, there is a limited understanding of virome diversity in ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Identification of a Novel Papillomavirus Associated with Squamous Cell Carcinoma in a Domestic Cat

Maura Carrai, Kate van Brussel, Mang Shi, Ci-Xiu Li, John Munday, Katja Voss, Alicia McLuckie, David Taylor, Andrew Laws, Edward Holmes, Vanessa Barrs, Julia Beatty,

Papillomaviruses infect the skin and mucosal surfaces of diverse animal hosts with consequences ranging from asymptomatic colonization to highly malignant epithelial cancers. Increasing evidence suggests a role for papillomaviruses in the most common cutaneous malignancy of domestic cats, squamous cell carcinoma (SCC). Using total DNA sequencing we identified a novel ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Limited overlap in RNA virome composition among rabbits and their ectoparasites reveals barriers to virus transmission

Jackie Mahar, Mang Shi, Robyn Hall, Tanja Strive, Edward Holmes,

Abstract Ectoparasites play an important role in virus transmission among vertebrates. However, little is known about the extent and composition of viruses that pass between invertebrates and vertebrates. In Australia, flies and fleas support the mechanical transmission of viral biological controls against wild rabbits - rabbit haemorrhagic disease virus (RHDV) ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Metagenomic discovery and co-infection of diverse wobbly possum disease viruses and novel hepaciviruses in Australian brushtail possums

Wei-Shan Chang, John-Sebastian Eden, William Hartley, Mang Shi, Karrie Rose, Edward Holmes,

Abstract Background Australian brushtail possums ( Trichosurus vulpecula ) are an introduced pest species in New Zealand, but native to Australia where they are protected for biodiversity conservation. Wobbly possum disease (WPD) is a fatal neurological disease of Australian brushtail possums described in New Zealand populations that has been associated ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Meta-Transcriptomic Comparison of the RNA Viromes of the Mosquito Vectors Culex pipiens and Culex torrentium in Northern Europe.

John H-O Pettersson, Mang Shi, John-Sebastian Eden, Edward C Holmes, Jenny C Hesson,

Mosquitoes harbor an extensive diversity of 'insect-specific' RNA viruses in addition to those important to human and animal health. However, because most studies of the mosquito virome have been conducted at lower latitudes, little is known about the diversity and evolutionary history of RNA viruses sampled from mosquitoes in northerly ... Read more >>

Viruses (Viruses)
[2019, 11(11):]

Cited: 0 times

View full text PDF listing >>



Tamdy Virus in Ixodid Ticks Infesting Bactrian Camels, Xinjiang, China, 2018.

Hong Zhou, Zhenghai Ma, Tao Hu, Yuhai Bi, Amutikari Mamuti, Runyuan Yu, Michael J Carr, Mang Shi, Juan Li, Kirill Sharshov, George F Gao, Weifeng Shi,

We isolated Tamdy virus (TAMV; strain XJ01/TAMV/China/2018) from Hyalomma asiaticum ticks infesting Bactrian camels in Xinjiang, China, in 2018. The genome of the strain showed high nucleotide similarity with previously described TAMV strains from Asia. Our study highlights the potential threat of TAMV to public health in China. ... Read more >>

Emerging Infect. Dis. (Emerging infectious diseases)
[2019, 25(11):2136-2138]

Cited: 0 times

View full text PDF listing >>



Evolution of Termite Symbiosis Informed by Transcriptome-Based Phylogenies.

Ales Bucek, Jan Šobotník, Shulin He, Mang Shi, Dino P McMahon, Edward C Holmes, Yves Roisin, Nathan Lo, Thomas Bourguignon,

Termitidae comprises ∼80% of all termite species [1] that play dominant decomposer roles in tropical ecosystems [2, 3]. Two major events during termite evolution were the loss of cellulolytic gut protozoans in the ancestor of Termitidae and the subsequent gain in the termitid subfamily Macrotermitinae of fungal symbionts cultivated externally ... Read more >>

Curr. Biol. (Current biology : CB)
[2019, 29(21):3728-3734.e4]

Cited: 0 times

View full text PDF listing >>



A new lineage of segmented RNA viruses infecting animals

Darren Obbard, Mang Shi, Katherine Roberts, Ben Longdon, Alice Dennis,

Abstract Metagenomic sequencing has revolutionised our knowledge of virus diversity, with new virus sequences being reported faster than ever before. However, virus discovery from metagenomic sequencing usually depends on detectable homology: without a sufficiently close relative, so-called ‘dark’ virus sequences remain unrecognisable. An alternative approach is to use virus-identification methods ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Advertisement

Disclaimer
1.1755 s