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Author Daria Danilenko

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Highly Pathogenic Avian Influenza A(H5N8) Virus Clade 2.3.4.4b, Western Siberia, Russia, 2020.

Ivan Sobolev, Kirill Sharshov, Nikita Dubovitskiy, Olga Kurskaya, Alexander Alekseev, Sergey Leonov, Yuriy Yushkov, Victor Irza, Andrey Komissarov, Artem Fadeev, Daria Danilenko, Junki Mine, Ryota Tsunekuni, Yuko Uchida, Takehiko Saito, Alexander Shestopalov,

Two variants of highly pathogenic avian influenza A(H5N8) virus were detected in dead poultry in Western Siberia, Russia, during August and September 2020. One variant was represented by viruses of clade 2.3.4.4b and the other by a novel reassortant between clade 2.3.4.4b and Eurasian low pathogenicity avian influenza viruses circulating ... Read more >>

Emerg Infect Dis (Emerging infectious diseases)
[2021, 27(8):2224-2227]

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Evaluation of the performance of SARS--CoV--2 antibody assays for a longitudinal population-based study of COVID--19 spread in St. Petersburg, Russia.

Anton Barchuk, Daniil Shirokov, Mariia Sergeeva, Rustam Tursun Zade, Olga Dudkina, Varvara Tychkova, Lubov Barabanova, Dmitriy Skougarevskiy, Daria Danilenko,

Geographical variation in severe acute respiratory syndrome coronavirus 2 (SARS--CoV--2) spread requires seroprevalence studies based on local tests, but robust validation is needed. We summarize an evaluation of antibody tests used in a serological study of SARS--CoV--2 in Saint Petersburg, Russia. We validated three different antibody assays: chemiluminescent microparticle immunoassay ... Read more >>

J Med Virol (Journal of medical virology)
[2021, :]

Cited: 1 time

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Fast prototyping of a local fuzzy search system for decision support and retraining of hospital staff during pandemic.

Evgeny A Bakin, Oksana V Stanevich, Daria M Danilenko, Dmitry A Lioznov, Alexander N Kulikov,

<h4>Purpose</h4>The COVID-19 pandemic showed an urgent need for decision support systems to help doctors at a time of stress and uncertainty. However, significant differences in hospital conditions, as well as skepticism of doctors about machine learning algorithms, limit their introduction into clinical practice. Our goal was to test and apply ... Read more >>

Health Inf Sci Syst (Health information science and systems)
[2021, 9(1):21]

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Very little influenza in the WHO European Region during the 2020/21 season, weeks 40 2020 to 8 2021.

Cornelia Adlhoch, Piers Mook, Favelle Lamb, Lisa Ferland, Angeliki Melidou, Andrew J Amato-Gauci, Richard Pebody, ,

Between weeks 40 2020 and 8 2021, the World Health Organization European Region experienced a 99.8% reduction in sentinel influenza virus positive detections (33/25,606 tested; 0.1%) relative to an average of 14,966/39,407 (38.0%; p < 0.001) over the same time in the previous six seasons. COVID-19 pandemic public health and physical distancing measures ... Read more >>

Euro Surveill (Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin)
[2021, 26(11):]

Cited: 1 time

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Antigenic and Genetic Characterization of Swine Influenza Viruses Identified in the European Region of Russia, 2014-2020.

Daria M Danilenko, Andrey B Komissarov, Artem V Fadeev, Mikhail I Bakaev, Anna A Ivanova, Polina A Petrova, Anastasia D Vassilieva, Kseniya S Komissarova, Alyona I Zheltukhina, Nadezhda I Konovalova, Andrey V Vasin,

Pigs have long been recognized as "mixing vessels" in which new viruses are formed by reassortment involving various influenza virus lineages (avian, animal, human). However, surveillance of swine influenza viruses only gained real significance after the 2009 pandemic. A fundamentally important point is the fact that there is still no ... Read more >>

Front Microbiol (Frontiers in microbiology)
[2021, 12:662028]

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Evaluation of the performance of SARS-CoV-2 antibody assays for the longitudinal population-based study of COVID-19 spread in St. Petersburg, Russia

Anton Barchuk, Daniil Shirokov, Mariia Sergeeva, Rustam Tursun-zade, Olga Dudkina, Varvara Tychkova, Lubov Barabanova, Dmitriy Skougarevskiy, Daria Danilenko,

<h4>Background</h4> An evident geographical variation in the SARS-CoV-2 spread requires seroprevalence studies based on local tests with robust validation against already available antibody tests and neutralization assays. This report summarizes the evaluation of antibody tests used in the representative population-based serological study of SARS-CoV-2 in Saint Petersburg, Russia. <h4>Methods</h4> We ... Read more >>

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Genomic epidemiology of the early stages of the SARS-CoV-2 outbreak in Russia.

Andrey B Komissarov, Ksenia R Safina, Sofya K Garushyants, Artem V Fadeev, Mariia V Sergeeva, Anna A Ivanova, Daria M Danilenko, Dmitry Lioznov, Olga V Shneider, Nikita Shvyrev, Vadim Spirin, Dmitry Glyzin, Vladimir Shchur, Georgii A Bazykin,

The ongoing pandemic of SARS-CoV-2 presents novel challenges and opportunities for the use of phylogenetics to understand and control its spread. Here, we analyze the emergence of SARS-CoV-2 in Russia in March and April 2020. Combining phylogeographic analysis with travel history data, we estimate that the sampled viral diversity has ... Read more >>

Nat Commun (Nature communications)
[2021, 12(1):649]

Cited: 5 times

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Respiratory Syncytial Virus G Protein Sequence Variability among Isolates from St. Petersburg, Russia, during the 2013-2014 Epidemic Season.

Vera Krivitskaya, Kseniya Komissarova, Maria Pisareva, Maria Sverlova, Artem Fadeev, Ekaterina Petrova, Veronika Timonina, Anna Sominina, Daria Danilenko,

Human respiratory syncytial virus (RSV) is the most common cause of upper and lower respiratory tract infections in infants and young children. It is actively evolving under environmental and herd immunity influences. This work presents, for the first time, sequence variability analysis of RSV G gene and G protein using ... Read more >>

Viruses (Viruses)
[2021, 13(1):]

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Virological surveillance of influenza viruses in the WHO European Region in 2019/20 - impact of the COVID-19 pandemic.

Angeliki Melidou, Dmitriy Pereyaslov, Olav Hungnes, Katarina Prosenc, Erik Alm, Cornelia Adlhoch, James Fielding, Miriam Sneiderman, Oksana Martinuka, Lucia Pastore Celentano, Richard Pebody, , ,

The COVID-19 pandemic negatively impacted the 2019/20 WHO European Region influenza surveillance. Compared with previous 4-year averages, antigenic and genetic characterisations decreased by 17% (3,140 vs 2,601) and 24% (4,474 vs 3,403). Of subtyped influenza A viruses, 56% (26,477/47,357) were A(H1)pdm09, 44% (20,880/47,357) A(H3). Of characterised B viruses, 98% (4,585/4,679) ... Read more >>

Euro Surveill (Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin)
[2020, 25(46):]

Cited: 2 times

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COVID-19 and beyond: a call for action and audacious solidarity to all the citizens and nations, it is humanity’s fight

Charles Auffray, Rudi Balling, Niklas Blomberg, Myrna Bonaldo, Bertrand Boutron, Samir Brahmachari, Christian Bréchot, Alfredo Cesario, Sai-Juan Chen, Karine Clément, Daria Danilenko, Alberto Di Meglio, Andrea Gelemanović, Carole Goble, Takashi Gojobori, Jason Goldman, Michel Goldman, Yi-Ke Guo, James Heath, Leroy Hood, Peter Hunter, Li Jin, Hiroaki Kitano, Bartha Knoppers, Doron Lancet, Catherine Larue, Mark Lathrop, Martine Laville, Ariel Lindner, Antoine Magnan, Andres Metspalu, Edgar Morin, Lisa F.P. Ng, Laurent Nicod, Denis Noble, Laurent Nottale, Helga Nowotny, Theresa Ochoa, Iruka Okeke, Tolu Oni, Peter Openshaw, Mehmet Oztürk, Susanna Palkonen, Janusz Paweska, Christophe Pison, Mihael Polymeropoulos, Christian Pristipino, Ulrike Protzer, Josep Roca, Damjana Rozman, Marc Santolini, Ferran Sanz, Giovanni Scambia, Eran Segal, Ismail Serageldin, Marcelo Bento Soares, Peter Sterk, Sumio Sugano, Giulio Superti-Furga, David Supple, Jesper Tegner, Mathias Uhlen, Andrea Urbani, Alfonso Valencia, Vincenzo Valentini, Sylvie van der Werf, Manlio Vinciguerra, Olaf Wolkenhauer, Emiel Wouters,

<ns3:p> <h4>Background: </h4> Severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) belongs to a subgroup of coronaviruses rampant in bats for centuries. It caused the coronavirus disease 2019 (COVID-19) pandemic. Most patients recover, but a minority of severe cases experience acute respiratory distress or an inflammatory storm devastating many organs that can ... Read more >>

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Genomic epidemiology of the early stages of SARS-CoV-2 outbreak in Russia

Andrey Komissarov, Ksenia Safina, Sofya Garushyants, Artem Fadeev, Mariia Sergeeva, Anna Ivanova, Daria Danilenko, Dmitry Lioznov, Olga Shneider, Nikita Shvyrev, Vadim Spirin, Dmitry Glyzin, Vladimir Shchur, Georgii Bazykin,

The ongoing pandemic of SARS-CoV-2 presents novel challenges and opportunities for the use of phylogenetics to understand and control its spread. Here, we analyze the emergence of SARS-CoV-2 in Russia in March and April 2020. Combining phylogeographic analysis with travel history data, we estimate that the sampled viral diversity has ... Read more >>

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Complicated hospitalization due to influenza: results from the Global Hospital Influenza Network for the 2017-2018 season.

Bruno Lina, Alexandre Georges, Elena Burtseva, Marta C Nunes, Melissa K Andrew, Shelly A McNeil, Guillermo M Ruiz-Palacios, Luzhao Feng, Jan Kyncl, Philippe Vanhems, Justin R Ortiz, John Paget, Robert C Reiner, ,

BACKGROUND:Since 2011, the Global Influenza Hospital Surveillance Network (GIHSN) has used active surveillance to prospectively collect epidemiological and virological data on patients hospitalized with influenza virus infection. Here, we describe influenza virus strain circulation in the GIHSN participant countries during 2017-2018 season and examine factors associated with complicated hospitalization among ... Read more >>

BMC Infect Dis (BMC infectious diseases)
[2020, 20(1):465]

Cited: 3 times

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Experimental Infection of Adapted Influenza B Virus in Mice Model

Elena Prokopyeva, Olga Kurskaya, Ivan Sobolev, Mariia Solomatina, Tatyana Murashkina, Anastasia Suvorova, Alexander Alekseev, Daria Danilenko, Andrey Kommissarov, Artem Fadeev, Alexander Shestopalov, Alexander Dygai, Kirill Sharshov,

Over the years influenza B virus (IBV) contribute annual disease and can lead to serious respiratory disease among humans. More attention should be paid to the mammalian adaptive processes of B viruses and development of vaccines against current influenza. Because of preclinical trials of anti-influenza drugs are conducted mainly on ... Read more >>

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Rapid spread of influenza A(H1N1)pdm09 viruses with a new set of specific mutations in the internal genes in the beginning of 2015/2016 epidemic season in Moscow and Saint Petersburg (Russian Federation).

Andrey Komissarov, Andrey Komissarov, Artem Fadeev, Maria Sergeeva, Sergey Petrov, Kseniya Sintsova, Anna Egorova, Maria Pisareva, Zhanna Buzitskaya, Tamila Musaeva, Daria Danilenko, Nadezhda Konovalova, Polina Petrova, Kirill Stolyarov, Elizaveta Smorodintseva, Elena Burtseva, Kirill Krasnoslobodtsev, Elena Kirillova, Lyudmila Karpova, Mikhail Eropkin, Anna Sominina, Mikhail Grudinin,

A dramatic increase of influenza activity in Russia since week 3 of 2016 significantly differs from previous seasons in terms of the incidence of influenza and acute respiratory infection (ARI) and in number of lethal cases. We performed antigenic analysis of 108 and whole-genome sequencing of 77 influenza A(H1N1)pdm09 viruses ... Read more >>

Influenza Other Respir Viruses (Influenza and other respiratory viruses)
[2016, 10(4):247-253]

Cited: 9 times

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INFLUENZA SURVEILLANCE IN RUSSIA BASED ON EPIDEMIOLOGICAL AND LABORATORY DATA FOR THE PERIOD FROM 2005 TO 2012.

Sominina Anna, Elena Burtseva, Mikhail Eropkin, Ludmila Karpova, Vladimir Zarubaev, Elizaveta Smorodintseva, Nadezhda Konovalova, Daria Danilenko, Alexandra Prokopetz, Mikhail Grudinin, Maria Pisareva, Pavel Anfimov, Kirill Stolyarov, Oleg Kiselev, Elena Shevchenko, Valeriya Ivanova, Svetlana Trushakova, Nataliya Breslav, Dmitriy Lvov, Alexander Klimov, Ann Moen, Nancy Cox,

Exchange of information on and sharing of influenza viruses through the GISRS network has great significance for understanding influenza virus evolution, recognition of a new pandemic virus emergence and for preparing annual WHO recommendations on influenza vaccine strain composition. Influenza surveillance in Russia is based on collaboration of two NICs ... Read more >>

Am J Infect Dis (American journal of infectious diseases)
[2013, 9(3):77-93]

Cited: 4 times

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