Full Text Journal Articles by
Author D Cooper

Advertisement

Find full text journal articles






An electron holography study of perpendicular magnetic tunnel junctions nanostructured by deposition on pre-patterned conducting pillars.

V Boureau, V D Nguyen, A Masseboeuf, A Palomino, E Gautier, J Chatterjee, S Lequeux, S Auffret, L Vila, R Sousa, L Prejbeanu, D Cooper, B Dieny,

The fabrication of multi-gigabit magnetic random access memory (MRAM) chips requires the patterning of magnetic tunnel junctions at very small dimensions (sub-30 nm) and a very dense pitch. This remains a challenge due to the difficulty in etching magnetic tunnel junction stacks. We previously proposed a strategy to circumvent this ... Read more >>

Nanoscale (Nanoscale)
[2020, 12(33):17312-17318]

Cited: 0 times

View full text PDF listing >>



Thermal robustness of magnetic tunnel junctions with perpendicular shape anisotropy.

S Lequeux, N Perrissin, G Grégoire, L Tillie, A Chavent, N Strelkov, L Vila, L D Buda-Prejbeanu, S Auffret, R C Sousa, I L Prejbeanu, E Di Russo, E Gautier, A P Conlan, D Cooper, B Dieny,

The concept of Perpendicular Shape Anisotropy STT-MRAM (PSA-STT-MRAM) has been recently proposed as a solution to enable the downsize scalability of STT-MRAM devices beyond the sub-20 nm technology node. For conventional p-STT-MRAM devices with sub-20 nm diameters, the perpendicular anisotropy arising from the MgO/CoFeB interface becomes too weak to ensure ... Read more >>

Nanoscale (Nanoscale)
[2020, 12(11):6378-6384]

Cited: 0 times

View full text PDF listing >>



Advertisement

Neutralization of N501Y mutant SARS-CoV-2 by BNT162b2 vaccine-elicited sera

Pei-Yong Shi, Xuping Xie, Jing Zou, Camila Fontes-Garfias, Hongjie Xia, Kena Swanson, Mark Cutler, David Cooper, Vineet Menachery, Scott Weaver, Philip Dormitzer,

Rapidly spreading variants of SARS-CoV-2 that have arisen in the United Kingdom and South Africa share the spike N501Y substitution, which is of particular concern because it is located in the viral receptor binding site for cell entry and increases binding to the receptor. We generated isogenic N501 and Y501 ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Neutralization of N501Y mutant SARS-CoV-2 by BNT162b2 vaccine-elicited sera

Xuping Xie, Jing Zou, Camila Fontes-Garfias, Hongjie Xia, Kena Swanson, Mark Cutler, David Cooper, Vineet Menachery, Scott Weaver, Philip Dormitzer, Pei-Yong Shi,

Rapidly spreading variants of SARS-CoV-2 that have arisen in the United Kingdom and South Africa share the spike N501Y substitution, which is of particular concern because it is located in the viral receptor binding site for cell entry and increases binding to the receptor (angiotensin converting enzyme 2). We generated ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Identification of Discriminative Gene-level and Protein-level Features Associated with Gain-of-Function and Loss-of-Function Mutations

Cigdem Bayrak, Aayushee Jain, David Stein, Kumardeep Chaudhary, Girish Nadkarni, Tielman Van Vleck, Stephanie Boisson-Dupuis, Peter Stenson, David Cooper, Avner Schlessinger, Yuval Itan,

Gain-of-function (GOF) and loss-of-function (LOF) mutations in the same gene may result in markedly different clinical phenotypes and hence require different therapeutic treatments. Identifying the functional consequences of mutations is an important step toward understanding disease mechanisms. While there are numerous computational tools (e.g., CADD, SIFT, PolyPhen-2) to predict the ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



AMELIE 3: Fully Automated Mendelian Patient Reanalysis at Under 1 Alert per Patient per Year

Johannes Birgmeier, Ethan Steinberg, Ethan Bodle, Cole Deisseroth, Karthik Jagadeesh, Jennefer Kohler, Devon Bonner, Shruti Marwaha, Julian Martinez-Agosto, Stan Nelson, Christina Palmer, Joy Cogan, Rizwan Hamid, Joan Stoler, Joel Krier, Jill Rosenfeld, Paolo Moretti, David Adams, Vandana Shashi, Elizabeth Worthey, Christine Eng, Euan Ashley, Matthew Wheeler, Peter Stenson, David Cooper, Jonathan Bernstein, Gill Bejerano, ,

<h4>Background</h4> Many thousands of patients with a suspected Mendelian disease have their exomes/genomes sequenced every year, but only about 30% receive a definitive diagnosis. Since a novel Mendelian gene-disease association is published on average every business day, thousands of undiagnosed patient cases could receive a diagnosis each year if their ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Heritable pattern of oxidized DNA base repair coincides with pre-targeting of repair complexes to open chromatin.

Albino Bacolla, Shiladitya Sengupta, Zu Ye, Chunying Yang, Joy Mitra, Ruth B De-Paula, Muralidhar L Hegde, Zamal Ahmed, Matthew Mort, David N Cooper, Sankar Mitra, John A Tainer,

Human genome stability requires efficient repair of oxidized bases, which is initiated via damage recognition and excision by NEIL1 and other base excision repair (BER) pathway DNA glycosylases (DGs). However, the biological mechanisms underlying detection of damaged bases among the million-fold excess of undamaged bases remain enigmatic. Indeed, mutation rates ... Read more >>

Nucleic Acids Res (Nucleic acids research)
[2021, 49(1):221-243]

Cited: 0 times

View full text PDF listing >>



State-of-the-Art Data Management: Improving the Reproducibility, Consistency, and Traceability of Structural Biology and in Vitro Biochemical Experiments.

David R Cooper, Marek Grabowski, Matthew D Zimmerman, Przemyslaw J Porebski, Ivan G Shabalin, Magdalena Woinska, Marcin J Domagalski, Heping Zheng, Piotr Sroka, Marcin Cymborowski, Mateusz P Czub, Ewa Niedzialkowska, Barat S Venkataramany, Tomasz Osinski, Zbigniew Fratczak, Jacek Bajor, Juliusz Gonera, Elizabeth MacLean, Kamila Wojciechowska, Krzysztof Konina, Wojciech Wajerowicz, Maksymilian Chruszcz, Wladek Minor,

Efficient and comprehensive data management is an indispensable component of modern scientific research and requires effective tools for all but the most trivial experiments. The LabDB system developed and used in our laboratory was originally designed to track the progress of a structure determination pipeline in several large National Institutes ... Read more >>

Methods Mol Biol (Methods in molecular biology (Clifton, N.J.))
[2021, 2199:209-236]

Cited: 0 times

View full text PDF listing >>



Comparison of Critical Care Occupancy and Outcomes of Critically ill Patients during the 2020 COVID-19 Winter Surge and 2009 H1N1 Influenza Pandemic in Australia.

Ary Serpa Neto, Aidan Jc Burrell, Michael Bailey, Tessa Broadley, D Jamie Cooper, Craig J French, David Pilcher, Mark P Plummer, Tony Trapani, Steve A Webb, Rinaldo Bellomo, Andrew Udy, ,

<h4>Rationale</h4>Both 2009 pandemic influenza A (H1N1) and SARS-CoV-2 are transmitted by respiratory secretions and in severe cases result in a viral pneumonitis, requiring intensive care unit (ICU) admission. However, no studies have compared the clinical characteristics and outcomes of such patients.<h4>Objectives</h4>To report and compare the demographic characteristics, treatments, use of ... Read more >>

Ann Am Thorac Soc (Annals of the American Thoracic Society)
[2020, :]

Cited: 0 times

View full text PDF listing >>



Outcomes of Multiple Runs of Extracorporeal Membrane Oxygenation: An analysis of the Extracorporeal Life Support Registry.

David S Cooper, Ravi Thiagarajan, Brandon Michael Henry, Jonathan W Byrnes, Andrew Misfeldt, Jason Frischer, Eileen King, Zhiqian Gao, Peter Rycus, Bradley S Marino,

<h4>Objective</h4>When patients deteriorate after decannulation from extracorporeal membrane oxygenation (ECMO), a second run of extracorporeal support may be considered. However, repeat cannulation can be difficult and poor outcomes associated with multiple ECMO runs are a concern. The aim of this study was to evaluate outcomes and identify factors associated with ... Read more >>

J Intensive Care Med (Journal of intensive care medicine)
[2020, :885066620981903]

Cited: 0 times

View full text PDF listing >>



The first clinical trial-Kidney or heart?

David K C Cooper, David C Cleveland,

Xenotransplantation (Xenotransplantation)
[2020, :e12644]

Cited: 0 times

View full text PDF listing >>



Outcomes for patients with COVID-19 admitted to Australian intensive care units during the first four months of the pandemic.

Aidan Jc Burrell, Breanna Pellegrini, Farhad Salimi, Husna Begum, Tessa Broadley, Lewis T Campbell, Allen C Cheng, Winston Cheung, D James Cooper, Arul Earnest, Simon J Erickson, Craig J French, John M Kaldor, Edward Litton, Srinivas Murthy, Richard E McAllister, Alistair D Nichol, Annamaria Palermo, Mark P Plummer, Mahesh Ramanan, Benjamin Aj Reddi, Claire Reynolds, Tony Trapani, Steve A Webb, Andrew A Udy,

<h4>Objectives</h4>To describe the characteristics and outcomes of patients with COVID-19 admitted to intensive care units (ICUs) during the initial months of the pandemic in Australia.<h4>Design, setting</h4>Prospective, observational cohort study in 77 ICUs across Australia.<h4>Participants</h4>Patients admitted to participating ICUs with laboratory-confirmed COVID-19 during 27 February - 30 June 2020.<h4>Main outcome measures</h4>ICU ... Read more >>

Med J Aust (The Medical journal of Australia)
[2020, :]

Cited: 0 times

View full text PDF listing >>



Pattern of head circumference growth following bidirectional Glenn in infants with single ventricle heart disease.

Stephanie Y Tseng, Julia Anixt, Jareen Meinzen-Derr, Cameron Thomas, David S Cooper, Haleh C Heydarian,

<h4>Background</h4>Infants with single ventricle congenital heart disease demonstrate increasing head growth after bidirectional Glenn; however, the expected growth trajectory has not been well described.<h4>Aims</h4>1) We will describe the pattern of head circumference growth in the first year after bidirectional Glenn. 2) We will determine if head growth correlates with motor ... Read more >>

Cardiol Young (Cardiology in the young)
[2020, :1-8]

Cited: 0 times

View full text PDF listing >>



Escalating mean arterial pressure (MAP) in severe traumatic brain injury: a prospective, observational study.

Chien Yew Kow, Benjamin Harley, Charles Li, Phillip Romo, Panagiota Gkolia, Kuan-Ying Luke Lu, Catherine Bell, Rondhir Jithoo, Jin Wee Tee, D James Cooper, Jeffrey V Rosenfeld, Philip Lewis, Andrew Udy, Martin Hunn,

Introduction In order to investigate cerebral autoregulatory status in patients with severe traumatic brain injury (TBI), guidelines now suggest active manipulation of mean arterial pressure (MAP). However, there is a paucity of data describing the effect on intracranial pressure (ICP) when MAP is raised. Methods Consecutive patients with TBI requiring ... Read more >>

J Neurotrauma (Journal of neurotrauma)
[2020, :]

Cited: 0 times

View full text PDF listing >>



Erratum to "Six-month mortality and functional outcomes in aneurysmal sub-arachnoid haemorrhage patients admitted to intensive care units in Australia and New Zealand: A prospective cohort study" [J. Clin. Neurosci. 80 (2020) 92-99].

Andrew A Udy, Mark Finnis, Jeremy Cohen, Anthony Delaney, James Anstey, Matthew Anstey, Deborah Barge, Vishnu Bhardwa, Jasmin Board, Gail Brinkerhoff, Emily Fitzgerald, Oliver Flower, Paul M Healey, Anna Hunt, Cassie Lawrence, Jan Mehrtens, Lynette Newby, David Pearson, Eamon P Raith, Yvonne Robertson, Sacha Schweikert, Therese Starr, Mandy Tallott, Andrew van der Poll, Paul Young, Rinaldo Bellomo, David J Cooper,

J Clin Neurosci (Journal of clinical neuroscience : official journal of the Neurosurgical Society of Australasia)
[2020, 82(Pt A):192]

Cited: 0 times

View full text PDF listing >>



Number of Concussions Does Not Affect Treatment Response to Cognitive Rehabilitation Interventions Following Mild TBI in Military Service Members.

Anna S Ord, Robert D Shura, Glenn Curtiss, Patrick Armistead-Jehle, Rodney D Vanderploeg, Amy O Bowles, Jan E Kennedy, David F Tate, Douglas B Cooper,

<h4>Objective</h4>The study objective was to determine whether number of concussions would affect symptom improvement following cognitive rehabilitation (CR) interventions.<h4>Method</h4>Service members (N = 126) with concussion history completed a 6-week randomized control trial of CR interventions. Participants were stratified based on self-reported lifetime concussion frequency. Outcome measures included the Paced Auditory Serial Addition ... Read more >>

Arch Clin Neuropsychol (Archives of clinical neuropsychology : the official journal of the National Academy of Neuropsychologists)
[2020, :]

Cited: 0 times

View full text PDF listing >>



Interprofessional Simulation: From the Classroom to Clinical Practice.

Julie A Poore, Dylan D Cooper,

Interprofessional simulation (IPS), frequently referred to in the literature as simulation-enhanced interprofessional education (IPE), has been widely studied in nursing and medical education. For decades, the literature has suggested IPE as a valuable strategy for enhancing communication and collaboration among health professionals. Interprofessional collaborative practice (IPCP) is foundational to developing ... Read more >>

Annu Rev Nurs Res (Annual review of nursing research)
[2020, 39(1):105-125]

Cited: 0 times

View full text PDF listing >>



When helping hurts: COVID-19 critical incident involvement and resource depletion in health care workers.

Miguel P Caldas, Kathryn Ostermeier, Danielle Cooper,

A focus on helping others is generally lauded, particularly in medicine, but in the context of a pandemic when health care professionals are facing increased risk, loss, and trauma, this focus can potentially be detrimental. In this study, we sought to (a) examine if health care workers intensely involved in ... Read more >>

J Appl Psychol (The Journal of applied psychology)
[2021, 106(1):29-47]

Cited: 0 times

View full text PDF listing >>



The physiopathology of osteoarthritis: Paleopathological implications of non-articular lesions from a modern surgical sample.

Maryann E Scott, William N Dust, David M L Cooper, Ernest G Walker, Angela R Lieverse,

<h4>Objectives</h4>This research focused on osteoarthritis (OA) lesions on modern patients to 1) identify consistently observed lesions not included within current paleopathological measures of OA, 2) assess the correspondence of bone and cartilage lesions with clinical OA diagnostic criteria, and 3) discuss the correspondence of bone lesions with sources of pain ... Read more >>

Int J Paleopathol (International journal of paleopathology)
[2020, 32:31-40]

Cited: 0 times

View full text PDF listing >>



Verifying nomenclature of DNA variants in submitted manuscripts: Guidance for journals.

Jan Higgins, Raymond Dalgleish, Johan T den Dunnen, Greg Barsh, Peter J Freeman, David N Cooper, Sara Cullinan, Kay E Davies, Huw Dorkins, Li Gong, Issei Imoto, Teri E Klein, Bruce Korf, Adya Misra, Mark H Paalman, Sarah Ratzel, Juergen K V Reichardt, Heidi L Rehm, Katsushi Tokunaga, Karen E Weck, Garry R Cutting,

Documenting variation in our genomes is important for research and clinical care. Accuracy in the description of DNA variants is therefore essential. To address this issue, the Human Variome Project convened a committee to evaluate the feasibility of requiring authors to verify that all variants submitted for publication complied with ... Read more >>

Hum Mutat (Human mutation)
[2020, :]

Cited: 0 times

View full text PDF listing >>



A Prospective Study of Risk Factors Associated with Seroprevalence of SARS-CoV-2 Antibodies in Healthcare Workers at a Large UK Teaching Hospital

Daniel Cooper, Sara Lear, Laura Watson, Ashley Shaw, Mark Ferris, Rainer Doffinger, Rachel Bousfield, Katherine Sharrocks, Michael Weekes, Ben Warne, Dominic Sparkes, Nick Jones, Lucy Rivett, Matthew Routledge, Afzal Chaudhry, Katherine Dempsey, Mongomery Matson, Adil Lakha, George Gathercole, Olivia O’Connor, Emily Wilson, Orthi Shahzad, Kieran Toms, Rachel Thompson, Ian Halsall, David Halsall, Sally Houghton, Sofia Papadia, Nathalie Kingston, Kathleen Stirrups, Barbara Graves, Neil Walker, Hannah Stark, CITIID-NIHR BioResource COVID-19 Collaboration Group, Daniela DeAngelis, Shaun Seaman, Gordon Dougan, John Bradley, Estée Török, Ian Goodfellow, Stephen Baker,

Background: The COVID-19 pandemic continues to grow at an unprecedented rate. Healthcare workers (HCWs) are at higher risk of SARS-CoV-2 infection than the general population but risk factors for HCW infection are not well described.<br><br>Methods: We conducted a prospective sero-epidemiological study of HCWs at a UK teaching hospital using a ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Incorporation of posttransplant cyclophosphamide as part of standard immunoprophylaxis for all allogeneic transplants: a retrospective, single institution study.

Dennis L Cooper, Jacqueline Manago, Vimal Patel, Dale Schaar, Tracy Krimmel, Mary Kate McGrath, Anne Tyno, Yong Lin, Roger Strair,

The addition of posttransplant cyclophosphamide (PTCy) to standard graft-versus-host disease (GVHD) prophylaxis following haploidentical blood stem transplants has resulted in relatively low rates of GVHD. As GVHD remains a major cause of morbidity and mortality in patients receiving transplants from matched donors, we began to use PTCy in all blood ... Read more >>

Bone Marrow Transplant (Bone marrow transplantation)
[2020, :]

Cited: 0 times

View full text PDF listing >>



The reversion variant (p.Arg90Leu) at the evolutionarily adaptive p.Arg90 site in CELA3B predisposes to chronic pancreatitis

Emmanuelle Masson, Vinciane Rebours, Louis Buscail, Frédérique Frete, Mael Pagenault, Alain Lachaux, Jean-Baptiste Chevaux, Emmanuelle Génin, David Cooper, Claude Férec, Jian-Min Chen,

<h4>ABSTRACT</h4> A gain-of-function missense variant in the CELA3B gene, p.Arg90Cys (c.268C>T), has recently been reported to cause pancreatitis in an extended pedigree. Herein, we sequenced the CELA3B gene in 644 genetically unexplained French chronic pancreatitis (CP) patients (all unrelated) and 566 controls. No predicted loss-of-function variants were identified. None of ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Comparison of porcine corneal decellularization methods and importance of preserving corneal limbus through decellularization

Abdulkadir Isidan, Shaohui Liu, Angela Chen, Wenjun Zhang, Ping Li, Lester Smith, Hidetaka Hara, David K.C. Cooper, Burcin Ekser,

<h4>ABSTRACT</h4> <h4>Background</h4> The aim of this study is to compare the three previously applied, conventional porcine corneal decellularization methods and to demonstrate the importance of preserving the corneal limbus through decellularization. <h4>Methods</h4> Fresh, wild-type (with or without) limbus porcine corneas were decellularized using three different methods, including (i) sodium dodecyl ... Read more >>

()
[, :]

Cited: 0 times

View full text PDF listing >>



Depression Screening During Pregnancy: Compliance and Effectiveness in a Military Population.

Jordan Gisseman, Tara Fletcher, Abigail Schmolze, Devin Cooper, James Aden, Callie Cox-Bauer,

<h4>Introduction</h4>Perinatal and postpartum depression are common, affecting 13% to 24% of pregnant women through the first year postpartum. Depression screening is recommended by the American College of Obstetrics and Gynecology as an effective and low-cost intervention to improve patient outcomes; however, no nationwide screening rate is reported in the literature. ... Read more >>

Mil Med (Military medicine)
[2020, :]

Cited: 0 times

View full text PDF listing >>



Advertisement

Disclaimer
1.5673 s