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Author Ajay Parida

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Quantitative proteomics of hamster lung tissues infected with SARS-CoV-2 reveal host factors having implication in the disease pathogenesis and severity.

Voddu Suresh, Varshasnata Mohanty, Kiran Avula, Arup Ghosh, Bharati Singh, Rajendra Kumar Reddy, Deepti Parida, Amol Ratnakar Suryawanshi, Sunil Kumar Raghav, Soma Chattopadhyay, Punit Prasad, Rajeeb Kumar Swain, Rupesh Dash, Ajay Parida, Gulam Hussain Syed, Shantibhusan Senapati,

Syrian golden hamsters (Mesocricetus auratus) infected by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) manifests lung pathology. In this study, efforts were made to check the infectivity of a local SARS-CoV-2 isolate in a self-limiting and non-lethal hamster model and evaluate the differential expression of lung proteins during acute infection ... Read more >>

FASEB J (FASEB journal : official publication of the Federation of American Societies for Experimental Biology)
[2021, 35(7):e21713]

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Genetic determinants of micronutrient traits in graminaceous crops to combat hidden hunger.

P Sushree Shyamli, Sumi Rana, Sandhya Suranjika, Mehanathan Muthamilarasan, Ajay Parida, Manoj Prasad,

<h4>Key message</h4>Improving the nutritional content of graminaceous crops is imperative to ensure nutritional security, wherein omics approaches play pivotal roles in dissecting this complex trait and contributing to trait improvement. Micronutrients regulate the metabolic processes to ensure the normal functioning of the biological system in all living organisms. Micronutrient deficiency, ... Read more >>

Theor Appl Genet (TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik)
[2021, :]

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SARS-CoV-2 specific immune-signature in direct contacts of COVID-19 cases protect them from contracting disease: A Retrospective Study

Sunil Raghav, Kaushik Sen, Arup Ghosh, Sudeshna Datta, Abdul Ahad, Atimukta Jha, Sanchari Chatterjee, Sandhya Suranjika, Soumya Sengupta, Gargee Bhattacharya, Omprakash Shriwas, Kiran Avula, Jayasingh Kshatri, Punit Prasad, Ajay Parida,

The response to SARS-CoV-2 is largely impacted by the level of exposure and the status of immunity. The nature of protection shown by direct contacts of COVID-19 positive patients is quite intriguing to note. We aimed to study the immune differences reinforcing contact individuals in circumventing the disease. Our observation ... Read more >>

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De-novo transcriptome analysis unveils differentially expressed genes regulating drought and salt stress response in Panicum sumatrense.

Rasmita Rani Das, Seema Pradhan, Ajay Parida,

Screening the transcriptome of drought tolerant variety of little millet (Panicum sumatrense), a marginally cultivated, nutritionally rich, susbsistent crop, can identify genes responsible for its hardiness and enable identification of new sources of genetic variation which can be used for crop improvement. RNA-Seq generated ~ 230 million reads from control and treated ... Read more >>

Sci Rep (Scientific reports)
[2020, 10(1):21251]

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PAN-INDIA 1000 SARS-CoV-2 RNA Genome Sequencing Reveals Important Insights into the Outbreak

Arindam Maitra, Sunil Raghav, Ashwin Dalal, Farhan Ali, Vanessa Molin Paynter, Dhiraj Paul, Nidhan Biswas, Arup Ghosh, Kunal Jani, Sreedhar Chinnaswamy, Sanghamitra Pati, Arvind Sahu, Debashis Mitra, Manoj Kumar Bhat, Satyajit Mayor, Apurva Sarin, Yogesh Sauche, Aswin Sai Narain Seshasayee, Dasaradhi Palakodeti, Murali Bashyam, Ajay Parida, Saumitra Das, ,

The PAN-INDIA 1000 SARS-CoV-2 RNA Genome Sequencing Consortium has achieved its initial goal of completing the sequencing of 1000 SARS-CoV-2 genomes from nasopharyngeal and oropharyngeal swabs collected from individuals testing positive for COVID-19 by Real Time PCR. The samples were collected across 10 states covering different zones within India. Given ... Read more >>

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Homology Modeling Identifies Crucial Amino-Acid Residues That Confer Higher Na+ Transport Capacity of OcHKT1;5 from Oryza coarctata Roxb.

Suji Somasundaram, Anne-Aliénor Véry, Rithvik S Vinekar, Tetsuya Ishikawa, Kumkum Kumari, Shalini Pulipati, Kavitha Kumaresan, Claire Corratgé-Faillie, R Sowdhamini, Ajay Parida, Lana Shabala, Sergey Shabala, Gayatri Venkataraman,

HKT1;5 loci/alleles are important determinants of crop salinity tolerance. HKT1;5s encode plasmalemma-localized Na+ transporters, which move xylem Na+ into xylem parenchyma cells, reducing shoot Na+ accumulation. Allelic variation in rice OsHKT1;5 sequence in specific landraces (Nona Bokra OsHKT1;5-NB/Nipponbare OsHKT1;5-Ni) correlates with variation in salt tolerance. Oryza coarctata, a halophytic wild ... Read more >>

Plant Cell Physiol (Plant & cell physiology)
[2020, 61(7):1321-1334]

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Proteomics Revealed Distinct Responses to Salinity between the Halophytes Suaeda maritima (L.) Dumort and Salicornia brachiata (Roxb).

Jenifer Joseph Benjamin, Begoña Miras-Moreno, Fabrizio Araniti, Hajar Salehi, Letizia Bernardo, Ajay Parida, Luigi Lucini,

Plant resistance to salinity stress is one of the main challenges of agriculture. The comprehension of the molecular and cellular mechanisms involved in plant tolerance to salinity can help to contrast crop losses due to high salt conditions in soil. In this study, Salicornia brachiata and Suaeda maritima, two plants ... Read more >>

Plants (Basel) (Plants (Basel, Switzerland))
[2020, 9(2):]

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De novo transcriptome assembly and analysis of Phragmites karka, an invasive halophyte, to study the mechanism of salinity stress tolerance.

Soumya Shree Nayak, Seema Pradhan, Dinabandhu Sahoo, Ajay Parida,

With the rapidly deteriorating environmental conditions, the development of stress tolerant plants has become a priority for sustaining agricultural productivity. Therefore, studying the process of stress tolerance in naturally tolerant species hold significant promise. Phragmites karka is an invasive plant species found abundantly in tropical and sub tropical regions, fresh ... Read more >>

Sci Rep (Scientific reports)
[2020, 10(1):5192]

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Genome-wide identification and expression analysis of WRKY transcription factors in pearl millet (Pennisetum glaucum) under dehydration and salinity stress.

Jeky Chanwala, Suresh Satpati, Anshuman Dixit, Ajay Parida, Mrunmay Kumar Giri, Nrisingha Dey,

BACKGROUND:Plants have developed various sophisticated mechanisms to cope up with climate extremes and different stress conditions, especially by involving specific transcription factors (TFs). The members of the WRKY TF family are well known for their role in plant development, phytohormone signaling and developing resistance against biotic or abiotic stresses. In ... Read more >>

BMC Genomics (BMC genomics)
[2020, 21(1):231]

Cited: 4 times

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Identification of salt-responsive genes from C4 halophyte Suaeda nudiflora through suppression subtractive hybridization and expression analysis under individual and combined treatment of salt and elevated carbon dioxide conditions.

Saranya Jothiramshekar, Jenifer Joseph Benjamin, Rani Krishnasamy, Suja George, Rajalakshmi Swaminathan, Ajay Parida,

Salinization of soil is a prime abiotic stress that limits agriculture productivity worldwide. To Study the mechanisms that halophytes take up to survive under high salt condition is important in engineering salinity stress tolerance in sensitive species. <i>Suaeda nudiflora</i> is a halophyte plant that grows in the saline environment and ... Read more >>

Physiol Mol Biol Plants (Physiology and molecular biology of plants : an international journal of functional plant biology)
[2020, 26(1):163-172]

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Genome-wide identification and expression analysis of WRKY transcription factors in pearl millet (Pennisetum glaucum) under dehydration and salinity stress.

Jeky Chanwala, Suresh Satpati, Anshuman Dixit, Ajay Parida, Mrunmay Kumar Giri, Nrisingha Dey,

<h4>Background: </h4> Plants have developed various sophisticated mechanisms to cope up with climate extremes and different stress conditions, especially by involving specific transcription factors (TFs). The members of the WRKY TF family are well known for their role in plant development, phytohormone signaling and developing resistance against biotic or abiotic ... Read more >>

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Microhair on the adaxial leaf surface of salt secreting halophytic Oryza coarctata Roxb. show distinct morphotypes: Isolation for molecular and functional analysis

Raja Rajakani, Gothandapani Sellamuthu, Saravanakumar V, Kannappan S, Lana Shabala, Holger Meinke, Zhonghua Chen, Meixue Zhou, Ajay Parida, Sergey Shabala, Gayatri Venkataraman,

Halophytic Oryza coarctata is a good model system to examine mechanisms of salinity tolerance in rice. O. coarctata leaves show the presence of microhairs in adaxial leaf surface furrows that secrete salt under salinity. However, detailed molecular and physiological studies of O. coarctata microhairs are limited due to their relative ... Read more >>

Plant Sci (Plant science : an international journal of experimental plant biology)
[2019, 285:248-257]

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Microhair on the adaxial leaf surface of salt secreting halophytic Oryza coarctata Roxb. show distinct morphotypes: Isolation for molecular and functional analysis.

Raja Rajakani, Gothandapani Sellamuthu, Saravanakumar V, Kannappan S, Lana Shabala, Holger Meinke, Zhonghua Chen, Meixue Zhou, Ajay Parida, Sergey Shabala, Gayatri Venkataraman,

Halophytic Oryza coarctata is a good model system to examine mechanisms of salinity tolerance in rice. O. coarctata leaves show the presence of microhairs in adaxial leaf surface furrows that secrete salt under salinity. However, detailed molecular and physiological studies of O. coarctata microhairs are limited due to their relative ... Read more >>

Plant Sci (Plant science : an international journal of experimental plant biology)
[2019, 285:248-257]

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Evaluation of rapid molecular diagnostics for differentiating medicinal Kaempferia species from its adulterants.

Supriyo Basak, Ramesh Aadi Moolam, Ajay Parida, Sudip Mitra, Latha Rangan,

Accurate detection of unique herbs is crucial for herbal medicine preparation. Zingiberaceae species, which are important in Ayurvedic medicine of India, are often misidentified in Northeast (NE) Indian herbal markets. <i>Kaempferia galanga</i> (Zingiberaceae) is one of the major components of popular Ayurvedic drugs used for rheumatic diseases (i.e., "Gandha Thailam" ... Read more >>

Plant Divers (Plant diversity)
[2019, 41(3):206-211]

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Expression of wild rice Porteresia coarctata PcNHX1 antiporter gene (PcNHX1) in tobacco controlled by PcNHX1 promoter (PcNHX1p) confers Na+-specific hypocotyl elongation and stem-specific Na+ accumulation in transgenic tobacco.

Vidya Jegadeeson, Kumkum Kumari, Shalini Pulipati, Ajay Parida, Gayatri Venkataraman,

Soil salinization is a major abiotic stress condition that affects about half of global agricultural lands. Salinity leads to osmotic shock, ionic imbalance and/or toxicity and build-up of reactive oxygen species. Na⁺/H⁺ antiporters (NHXs) are integral membrane transporters that catalyze the electro-neutral exchange of K⁺/Na⁺ for H⁺ and are implicated ... Read more >>

Plant Physiol Biochem (Plant physiology and biochemistry : PPB)
[2019, 139:161-170]

Cited: 4 times

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Metabolomic insights into the mechanisms underlying tolerance to salinity in different halophytes.

Jenifer Joseph Benjamin, Luigi Lucini, Saranya Jothiramshekar, Ajay Parida,

Salinity is among the most detrimental and diffuse environmental stresses. Halophytes are plants that developed the ability to complete their life cycle under high salinity. In this work, a mass spectrometric metabolomic approach was applied to comparatively investigate the secondary metabolism processes involved in tolerance to salinity in three halophytes, ... Read more >>

Plant Physiol Biochem (Plant physiology and biochemistry : PPB)
[2019, 135:528-545]

Cited: 5 times

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Choline monooxygenase transcript expression triggers glycine betaine accumulation in Suaeda maritima when subjected to a salt concentration optimal for its growth

Sindhu Kuttan, H.M. Sankararamasubramanian, Ajay Kumar Parida,

Suaeda maritima (L.) Dumort, an annual halophyte known to be a salt-accumulator is also known for the accumulation of the osmolyte, glycine betaine (GB). This study is an attempt to understand the growth and GB accumulation under optimal concentration of 200 mM NaCl in S. maritima. Salt treatment with 200 ... Read more >>

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T-homoeolog specific plasma membrane protein 3 [Nt(t)PMP3-2] in polyploid Nicotiana tabacum shows conserved alternative splicing, derived from extant Nicotiana tomentosiformis parent.

Kumkum Kumari, Vidya Jegadeeson, S Suji, Gayatri Venkataraman, Ajay Parida,

Abiotic stress induced plasma membrane protein 3 (PMP3) genes occur as multigene families in plants, coding for hydrophobic proteins. Group I PMP3s code for shorter ORFs while Group II PMP3s code for proteins with C-terminal extensions. Allotetraploid Nicotiana tabacum (SSTT; 2n = 48) derives its parentage from extant ancestors related to Nicotiana ... Read more >>

Plant Physiol Biochem (Plant physiology and biochemistry : PPB)
[2017, 119:338-345]

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A novel heavy metal ATPase peptide from Prosopis juliflora is involved in metal uptake in yeast and tobacco.

Nisha S Keeran, G Ganesan, Ajay K Parida,

Heavy metal pollution of agricultural soils is one of the most severe ecological problems in the world. Prosopis juliflora, a phreatophytic tree species, grows well in heavy metal laden industrial sites and is known to accumulate heavy metals. Heavy Metal ATPases (HMAs) are ATP driven heavy metal pumps that translocate ... Read more >>

Transgenic Res (Transgenic research)
[2017, 26(2):247-261]

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Diverse expression of sucrose transporter gene family in Zea mays.

B Usha, D Bordoloi, Ajay Parida,

J Genet (Journal of genetics)
[2015, 94(1):151-154]

Cited: 3 times

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Analysis of transcriptional regulation and tissue-specific expression of Avicennia marina Plasma Membrane Protein 3 suggests it contributes to Na(+) transport and homoeostasis in A. marina.

Rajalakshmi Chidambaram, Gayatri Venkataraman, Ajay Parida,

Plasma membrane proteins (PMP3) play a role in cation homoeostasis. The 5' flanking sequence of stress inducible, Avicennia marina PMP3 (AmPMP3prom) was transcriptionally fused to (a) GUS or (b) GFP-AmPMP3 and analyzed in transgenic tobacco. Tissue-histochemical GUS and GFP:AmPMP3 localization are co-incident under basal and stress conditions. AmPMP3prom directed GUS ... Read more >>

Plant Sci (Plant science : an international journal of experimental plant biology)
[2015, 236:89-102]

Cited: 5 times

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Analysis of transcriptional regulation and tissue-specific expression of Avicennia marina Plasma Membrane Protein 3 suggests it contributes to Na+ transport and homoeostasis in A. marina

Rajalakshmi Chidambaram, Ajay Parida, Gayatri Venkataraman,

Plasma membrane proteins (PMP3) play a role in cation homoeostasis. The 5′ flanking sequence of stress inducible, Avicennia marina PMP3 (AmPMP3prom) was transcriptionally fused to (a) GUS or (b) GFP-AmPMP3 and analyzed in transgenic tobacco. Tissue-histochemical GUS and GFP:AmPMP3 localization are co-incident under basal and stress conditions. AmPMP3prom directed GUS ... Read more >>

Plant Sci (Plant science : an international journal of experimental plant biology)
[2015, 236:89-102]

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A vacuolar antiporter is differentially regulated in leaves and roots of the halophytic wild rice Porteresia coarctata (Roxb.) Tateoka.

Praseetha Kizhakkedath, Vidya Jegadeeson, Gayatri Venkataraman, Ajay Parida,

Vacuolar NHX-type antiporters play a role in Na(+)/K(+) uptake that contributes to growth, nutrition and development. Under salt/osmotic stress they mediate the vacuolar compartmentalization of K(+)/Na(+), thereby preventing toxic Na(+)K(+) ratios in the cytosol. Porteresia coarctata (Roxb.) Tateoka, a mangrove associate, is a distant wild relative of cultivated rice and ... Read more >>

Mol Biol Rep (Molecular biology reports)
[2015, 42(6):1091-1105]

Cited: 3 times

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Genetic diversity and relationship of Hedychium from Northeast India as dissected using PCA analysis and hierarchical clustering.

Supriyo Basak, Aadi Moolam Ramesh, Vigya Kesari, Ajay Parida, Sudip Mitra, Latha Rangan,

Molecular genetic fingerprints of eleven Hedychium species from Northeast India were developed using PCR based markers. Fifteen inter-simple sequence repeats (ISSRs) and five amplified fragment length polymorphism (AFLP) primers produced 547 polymorphic fragments. Positive correlation (r = 0.46) was observed between the mean genetic similarity and genetic diversity parameters at the inter-species ... Read more >>

Meta Gene (Meta gene)
[2014, 2:459-468]

Cited: 3 times

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Differential expression analysis of transcripts related to oil metabolism in maturing seeds of Jatropha curcas L.

Divya Chandran, H M Sankararamasubramanian, M Ashok Kumar, Ajay Parida,

Jatropha curcas has been widely studied at the molecular level due to its potential as an alternative source of fuel. Many of the reports till date on this plant have focussed mainly on genes contributing to the accumulation of oil in its seeds. A suppression subtractive hybridization strategy was employed ... Read more >>

Physiol Mol Biol Plants (Physiology and molecular biology of plants : an international journal of functional plant biology)
[2014, 20(2):181-190]

Cited: 3 times

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