Full Text Journal Articles by
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Scanning the landscape of genome architecture of non-O1 and non-O139 Vibrio cholerae by whole genome mapping reveals extensive population genetic diversity.

Carol Chapman, Matthew Henry, Kimberly A Bishop-Lilly, Joy Awosika, Adam Briska, Ryan N Ptashkin, Trevor Wagner, Chythanya Rajanna, Hsinyi Tsang, Shannon L Johnson, Vishwesh P Mokashi, Patrick S G Chain, Shanmuga Sozhamannan,

Historically, cholera outbreaks have been linked to V. cholerae O1 serogroup strains or its derivatives of the O37 and O139 serogroups. A genomic study on the 2010 Haiti cholera outbreak strains highlighted the putative role of non O1/non-O139 V. cholerae in causing cholera and the lack of genomic sequences of ... Read more >>

PLoS One (PloS one)
[2015, 10(3):e0120311]

Cited: 12 times

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Comparative whole-genome mapping to determine Staphylococcus aureus genome size, virulence motifs, and clonality.

Sanjay K Shukla, Madhulatha Pantrangi, Buffy Stahl, Adam M Briska, Mary E Stemper, Trevor K Wagner, Emily B Zentz, Steven M Callister, Steven D Lovrich, John K Henkhaus, Colin W Dykes,

Despite being a clonal pathogen, Staphylococcus aureus continues to acquire virulence and antibiotic-resistant genes located on mobile genetic elements such as genomic islands, prophages, pathogenicity islands, and the staphylococcal chromosomal cassette mec (SCCmec) by horizontal gene transfer from other staphylococci. The potential virulence of a S. aureus strain is often ... Read more >>

J Clin Microbiol (Journal of clinical microbiology)
[2012, 50(11):3526-3533]

Cited: 15 times

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Use of optical mapping to sort uropathogenic Escherichia coli strains into distinct subgroups.

William R Schwan, Adam Briska, Buffy Stahl, Trevor K Wagner, Emily Zentz, John Henkhaus, Steven D Lovrich, William A Agger, Steven M Callister, Brian DuChateau, Colin W Dykes,

Optical maps were generated for 33 uropathogenic Escherichia coli (UPEC) isolates. For individual genomes, the NcoI restriction fragments aligned into a unique chromosome map for each individual isolate, which was then compared with the in silico restriction maps of all of the sequenced E. coli and Shigella strains. All of ... Read more >>

Microbiology (Reading) (Microbiology (Reading, England))
[2010, 156(Pt 7):2124-2135]

Cited: 18 times

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Optical mapping reveals a large genetic inversion between two methicillin-resistant Staphylococcus aureus strains.

Sanjay K Shukla, Jennifer Kislow, Adam Briska, John Henkhaus, Colin Dykes,

Staphylococcus aureus is a highly versatile and evolving bacterium of great clinical importance. S. aureus can evolve by acquiring single nucleotide polymorphisms and mobile genetic elements and by recombination events. Identification and location of novel genomic elements in a bacterial genome are not straightforward, unless the whole genome is sequenced. ... Read more >>

J Bacteriol (Journal of bacteriology)
[2009, 191(18):5717-5723]

Cited: 21 times

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Whole-genome shotgun optical mapping of Rhodospirillum rubrum.

Susan Reslewic, Shiguo Zhou, Mike Place, Yaoping Zhang, Adam Briska, Steve Goldstein, Chris Churas, Rod Runnheim, Dan Forrest, Alex Lim, Alla Lapidus, Cliff S Han, Gary P Roberts, David C Schwartz,

Rhodospirillum rubrum is a phototrophic purple nonsulfur bacterium known for its unique and well-studied nitrogen fixation and carbon monoxide oxidation systems and as a source of hydrogen and biodegradable plastic production. To better understand this organism and to facilitate assembly of its sequence, three whole-genome restriction endonuclease maps (XbaI, NheI, ... Read more >>

Appl Environ Microbiol (Applied and environmental microbiology)
[2005, 71(9):5511-5522]

Cited: 47 times

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Computer model of passive signal integration based on whole-cell in vitro studies of rat lateral geniculate nucleus.

Adam M Briska, Daniel J Uhlrich, William W Lytton,

Computer models were used to investigate passive properties of lateral geniculate nucleus thalamocortical cells and thalamic interneurons based on in vitro whole-cell study. Two neurons of each type were characterized physiologically and morphologically. Thalamocortical cells transmitted 37% of steady-state signal orthodromically (distal dendrite to soma) and 93% antidromically (soma to ... Read more >>

Eur J Neurosci (The European journal of neuroscience)
[2003, 17(8):1531-1541]

Cited: 13 times

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Ada: Constructing a Synthetic Organism

Kynan Eng, Andreas Bbler, Ulysses Bernardet, Mark Blanchard, Adam Briska, Jrg Conradt, Marcio Costa, Tobi Delbrck, Rodney J Douglas, David Klein, Jonatas Manzolli, Matti Mintz, Thomas Netter, Fabian Roth, Ueli Rutishauser, Klaus Wassermann, Adrian M, Aaron Wittmann, Reto Wyss, Paul F M J Verschure,

Despite immense progress in neuroscience, we remainrestricted in our ability to construct autonomous,behaving robots that match the competence of evensimple animals. The barriers to the realisation of thisgoal include lack of knowledge of system integrationissues, engineering limitations and the organisationalconstraints common to many research laboratories. Inthis paper we describe our ... Read more >>

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Ada: Buildings as Organisms

Kynan Eng, Andreas Bbler, Ulysses Bernardet, Mark Blanchard, Adam Briska, Marcio Costa, Rodney Douglas, David Klein, Jonatas Manzolli, Matti Mintz, Thomas Netter, Fabian Roth, Klaus Wassermann, Adrian Whatley, Aaron Wittmann, Paul Verschure,

Buildings are usually conceived as expressing a static functionality where users are required toadapt to its pre-defined properties. This view of architecture is outdated. Buildings can beconceived and constructed as perceiving, acting and adapting entities not unlike biologicalsystems. Although several existing projects have aimed at developing "smart" rooms or buildings,in ... Read more >>

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Ada: Buildings as Organisms

Kynan Eng, Andreas Bbler, Ulysses Bernardet, Mark Blanchard, Adam Briska, Marcio Costa, Rodney Douglas, David Klein, Jonatas Manzolli, Matti Mintz, Thomas Netter, Fabian Roth, Klaus Wassermann, Adrian Whatley, Aaron Wittmann, Paul Verschure,

Buildings are usually conceived as expressing a static functionality where users are required toadapt to its pre-defined properties. This view of architecture is outdated. Buildings can beconceived and constructed as perceiving, acting and adapting entities not unlike biologicalsystems. Although several existing projects have aimed at developing "smart" rooms or buildings,in ... Read more >>

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Cited: 0 times

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Ada: Constructing a Synthetic Organism

Kynan Eng, Andreas Bbler, Ulysses Bernardet, Mark Blanchard, Adam Briska, Jrg Conradt, Marcio Costa, Tobi Delbrck, Rodney J Douglas, David Klein, Jonatas Manzolli, Matti Mintz, Thomas Netter, Fabian Roth, Ueli Rutishauser, Klaus Wassermann, Adrian M, Aaron Wittmann, Reto Wyss, Paul F M J Verschure,

Despite immense progress in neuroscience, we remainrestricted in our ability to construct autonomous,behaving robots that match the competence of evensimple animals. The barriers to the realisation of thisgoal include lack of knowledge of system integrationissues, engineering limitations and the organisationalconstraints common to many research laboratories. Inthis paper we describe our ... Read more >>

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